Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b09
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 32 0.43
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 32 0.43
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 32 0.43
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 31 0.99
L16622-6|AAA27913.2| 408|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 5.3
U97194-5|AAB52448.1| 442|Caenorhabditis elegans Hypothetical pr... 28 5.3
AC024775-7|AAK68451.1| 251|Caenorhabditis elegans Hypothetical ... 28 5.3
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 361 CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 453
CA P NP+ P D RK CLP ++ T
Sbjct: 977 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1007
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 361 CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 453
CA P NP+ P D RK CLP ++ T
Sbjct: 1561 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1591
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 361 CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 453
CA P NP+ P D RK CLP ++ T
Sbjct: 977 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1007
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 361 CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 453
CA P NP+ P D RK CLP ++ T
Sbjct: 1561 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1591
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 361 CACPSDFNPSTPSMYDCRKYGHCLPSNDLIT 453
CA P NP+ P D RK CLP ++ T
Sbjct: 1561 CAYPGSCNPNDPMSCDVRKRQQCLPRGNIYT 1591
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 30.7 bits (66), Expect = 0.99
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 328 TNKETCQECPSCACPSDFNPSTPSMYD---CRKYGHCLPSNDLITRFECLPNFPTGIFRC 498
T++ T ECPS +D D C GHC+ + CLP+F TGI+
Sbjct: 261 TSRTTQCECPSGFMGADCKELQARPCDREPCLNGGHCVDDGQNLFTCFCLPSF-TGIYCG 319
Query: 499 TTGETLGSGAD 531
+ L +G+D
Sbjct: 320 EPVDCLVNGSD 330
>L16622-6|AAA27913.2| 408|Caenorhabditis elegans Hypothetical
protein C02D5.1 protein.
Length = 408
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 521 LPRVSPVVHRNIPVGKLG-RHSNRVMRSFEGKQWPYFRQSYMLGVDG 384
+P S VHR+ P+ KLG R S+ V FE + P SY++G +G
Sbjct: 209 IPLDSIGVHRSTPLDKLGMRSSDTVQLFFEDVRVP---SSYIIGEEG 252
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +1
Query: 334 KETCQECPSCA---CPSDFNPSTPSMYDC 411
+ CQECPSC P FNP ++C
Sbjct: 42 RSVCQECPSCCGNDGPQPFNPVFNIHFNC 70
>U97194-5|AAB52448.1| 442|Caenorhabditis elegans Hypothetical
protein C37A2.3 protein.
Length = 442
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 500 VHRNIPVGKLG-RHSNRVMRSFEGKQWPYFRQSYMLGVDG 384
VHR+ P+ KLG R S+ V FE + P SY++G +G
Sbjct: 250 VHRSTPLDKLGMRSSDTVQLFFEDVRVP---SSYIIGEEG 286
>AC024775-7|AAK68451.1| 251|Caenorhabditis elegans Hypothetical
protein Y41D4A.1 protein.
Length = 251
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +1
Query: 328 TNKETCQECP-SCACPSDFNPSTPSMYDCRKYGHCLPS--NDLITRFECLPNFPTGIFRC 498
T+ C ECP A + N P+ + C+ G+C PS N+ C+ N RC
Sbjct: 185 TSTNYCCECPYGQAYGTCGNGICPNGFSCQANGNCCPSCPNNQTPFGSCVAN------RC 238
Query: 499 TTGETLGSGADKGCC 543
G T SG CC
Sbjct: 239 GGGRTCRSG--NICC 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,706
Number of Sequences: 27780
Number of extensions: 292528
Number of successful extensions: 668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -