Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b08
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12370.1 68418.m01455 exocyst complex component Sec10-related... 32 0.33
At4g15830.1 68417.m02408 expressed protein 32 0.44
At1g22060.1 68414.m02759 expressed protein 31 0.58
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi... 29 3.1
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 28 5.4
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 28 5.4
At5g41050.1 68418.m04990 expressed protein 28 7.1
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 28 7.1
At1g77080.2 68414.m08975 MADS-box protein AGL27-II (AGL27) / MAD... 27 9.4
At1g24610.1 68414.m03096 SET domain-containing protein low simil... 27 9.4
>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
low similarity to SP|O00471 Exocyst complex component
Sec10 (hSec10) {Homo sapiens}
Length = 858
Score = 32.3 bits (70), Expect = 0.33
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Frame = +1
Query: 169 PEVEAALRTFGNCLKGLVD--------LNVLKTEI--EEAKPNGALDEVFKKYCDKSAQL 318
PEV+ L F + K LVD LN LK E+ +++K L E + A+L
Sbjct: 87 PEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEGVDGLFESFARL 146
Query: 319 KGCISSVLQGVRPCVGNEYANHINDAQNST-NQLIDFVCY 435
G ISSV Q +G+ + DAQ T +Q ID + Y
Sbjct: 147 DGRISSVGQTAAK-IGDHLQS--ADAQRETASQTIDLIKY 183
>At4g15830.1 68417.m02408 expressed protein
Length = 296
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 100 DDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALD 279
++ + ++ +Q + DK+PE A R+ N L N EE G+
Sbjct: 217 NEMEEFGMILLAQMAADQLSDKLPEAREAARSMVNSLFEKFTWN------EEEDEEGSKQ 270
Query: 280 EVFKKYCDKS 309
E +KK+C+K+
Sbjct: 271 EAWKKFCEKN 280
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 31.5 bits (68), Expect = 0.58
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Frame = +1
Query: 370 EYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGGPECFQQKTENLKTC---FLNLKQS 540
EY + + + +L F C D +F C + E L C L ++
Sbjct: 1334 EYVRNAHRESSFIEEL--FQCLMAADVQLIFTKIQSDICINEFAEQLSCCSNSHLEFQKK 1391
Query: 541 FPTVESANNLSLVEKCAKVDEMTSCIVKSLEECSTPTPANMAESLIKFMRKD 696
+ VESA N LV + +DE ++ +LE + ++MA+S R D
Sbjct: 1392 YTDVESALNHCLVNETRYMDENNQLLI-NLEVLKSELESSMAKSRALADRND 1442
>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 879
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 70 ITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 249
IT F VL + + V + N EDK+PE+++ G G +D+ V +
Sbjct: 740 ITAFIGNVLLHNAMKSKGVYEAWTRMRNIEDKIPEMKSLGELIG-LFSGRIDMEVELKRL 798
Query: 250 EE 255
+E
Sbjct: 799 DE 800
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 274 LDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNS 405
LD F+ + + G I +LQG+R + +EY + N+ NS
Sbjct: 136 LDREFESILRRRRRSSGNILQLLQGIRAGIASEYESSDNNWDNS 179
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 499 TENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKS 627
TE L ++L + + V+ + +LSL E C K+ + IV+S
Sbjct: 52 TEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRS 94
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 94 LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 225
+AD QI+AV + T +A + V A ++G+C L +
Sbjct: 1443 MADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAE 1486
>At5g41050.1 68418.m04990 expressed protein
Length = 172
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/82 (25%), Positives = 33/82 (40%)
Frame = +1
Query: 217 LVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDA 396
L+ LN L + AKPNG + + YCD + S P V N A
Sbjct: 14 LLSLNSLSLKHSSAKPNGKITVMGLVYCDVCSNNSFSNHSYF---IPGVEVRIICRFNSA 70
Query: 397 QNSTNQLIDFVCYKDGDRIALF 462
+ T ++I F + + + L+
Sbjct: 71 SSRTREMITFSANRTTNELGLY 92
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/53 (22%), Positives = 31/53 (58%)
Frame = +1
Query: 487 FQQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSLEECST 645
+++ E + C + L++ +ES +N ++ E C+KVD + + + +E+ ++
Sbjct: 595 YKEMLEESEKCRVLLEEQISQLESDSNENIRELCSKVDIAYAKLAEEVEKTAS 647
>At1g77080.2 68414.m08975 MADS-box protein AGL27-II (AGL27) / MADS
affecting flowering 1 (MAF1) contains similarity to MADS
box transcription factor GI:3688591 from [Triticum
aestivum]; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 192
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +1
Query: 442 GDRIALFIAEGGPECFQQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIV 621
GD I P+CF+ E +L K+ TV+S V+ VD + S +
Sbjct: 60 GDEIEALFKPEKPQCFELDLEEKIQNYLPHKELLETVQSKLEEPNVDN-VSVDSLIS-LE 117
Query: 622 KSLEECSTPTPANMAESLIKFM 687
+ LE + + A AE +++++
Sbjct: 118 EQLETALSVSRARKAELMMEYI 139
>At1g24610.1 68414.m03096 SET domain-containing protein low
similarity to SP|Q43088 Ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (EC 2.1.1.127)
{Pisum sativum}; contains Pfam profile PF00856: SET
domain
Length = 476
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2
Query: 281 SSSAPFGLASSISVFRT 231
S+ APFG+A+ I+VFRT
Sbjct: 392 SAVAPFGIANEIAVFRT 408
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,593,960
Number of Sequences: 28952
Number of extensions: 315233
Number of successful extensions: 970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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