Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b07
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700...    29   2.9  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    27   8.7  
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167...    27   8.7  

>01_06_1699 -
           39269477-39269574,39269690-39269929,39270029-39270092,
           39270251-39270771,39271032-39271326,39271400-39271564,
           39271650-39272237,39272617-39272703,39272982-39274429,
           39274515-39275015,39275574-39275678,39276095-39276143
          Length = 1386

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 204 LLNQYQWETTRFDIRT*LYEII---LMQFKLSCPIQGVIFWLKVLRVSVSTYARCL 362
           +L  + WET  FD    L ++    L ++  +C     +FW     VSV T+  C+
Sbjct: 400 ILKLHAWETAYFDKLLNLRDVERGWLRKYLYTCSAIAFLFWASPTLVSVVTFGVCI 455


>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 603  KNQLIAEIVYSAGFVYECIALTQTFEHATEDPVSNCTLLR 484
            +N+    +V+   ++ EC AL +  EH   DPV    LL+
Sbjct: 1073 ENKYNLVLVFLLCYIPECSALLEALEHCIYDPVVVSILLK 1112


>04_04_0396 +
           24915880-24916222,24916318-24916577,24916689-24916784,
           24916889-24917059,24917262-24917975
          Length = 527

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 255 LYEIILMQFKLS-CPIQGVIFWLKVL 329
           L  ++L Q  L  CP +GV+FW +VL
Sbjct: 305 LLGVLLYQISLKDCPFRGVLFWGQVL 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,933
Number of Sequences: 37544
Number of extensions: 264952
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)