Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b06
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62420.1 68414.m07042 expressed protein contains Pfam profile...    30   1.5  
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put...    29   2.7  
At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family...    28   4.7  
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family...    28   4.7  
At2g23450.2 68415.m02800 protein kinase family protein contains ...    27   8.2  
At2g23450.1 68415.m02799 protein kinase family protein contains ...    27   8.2  

>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 465

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +1

Query: 178 GGFPTVTPDPGSLPLLSQTPSLVVKCDQEGDNTCKILCNALATATKAKGPEILCSRLKDV 357
           G F    P    L +LSQ P + V   +E     +I+C+ +  + K  G  +   R    
Sbjct: 164 GEFEIARPTKRYLSILSQVPRVFVGTSEELKLLVRIMCHEMRRSMKHVGIHVPPWRRNGY 223

Query: 358 NELKLSAFYK 387
            + K   FYK
Sbjct: 224 MQAKWFGFYK 233


>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 786

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
 Frame = +1

Query: 178 GGFPTVTPDPGSLPLLSQTPSLVVKCDQEGDN---------TCKILCNALATATKAKGPE 330
           G F      P  L LL+   S  V+CD +G N         T   L NAL   T  + P+
Sbjct: 198 GNFNYSAFSPTKLELLTFFTSGPVQCDSDGCNLQLVRTPNSTLPPLINALEAYTIIEFPQ 257

Query: 331 ILCSRLKDVNELK-LSAFYKTCDKPW 405
           +  S L DVN +K + A Y+     W
Sbjct: 258 LETS-LSDVNAIKNIKATYRLSKTSW 282


>At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 349

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 430 APLCCENSQVKVCSSVVTLKSTVQPE 507
           A + C  S++ VCS V  L S+ QP+
Sbjct: 322 AEIICSESEITVCSDVAYLDSSQQPQ 347


>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 488

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 430 APLCCENSQVKVCSSVVTLKSTVQPE 507
           A + C  S++ VCS V  L S+ QP+
Sbjct: 461 AEIICSESEITVCSDVAYLDSSQQPQ 486


>At2g23450.2 68415.m02800 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 536 LLINYMVVFASGCTVDFSVTTDEQTFTWEFSQQSGASAVMFA*LHGLSH 390
           L + Y   F++GC++ F  +  E+    +FS Q+     +F    GLSH
Sbjct: 55  LTLPYPFGFSNGCSIRFDCSAAEKPMIGDFSVQNVTENSIFV---GLSH 100


>At2g23450.1 68415.m02799 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 536 LLINYMVVFASGCTVDFSVTTDEQTFTWEFSQQSGASAVMFA*LHGLSH 390
           L + Y   F++GC++ F  +  E+    +FS Q+     +F    GLSH
Sbjct: 55  LTLPYPFGFSNGCSIRFDCSAAEKPMIGDFSVQNVTENSIFV---GLSH 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,199,046
Number of Sequences: 28952
Number of extensions: 267767
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)