Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b04
         (574 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D568F1 Cluster: PREDICTED: similar to CG9601-PA;...    47   3e-04
UniRef50_UPI00015B4C59 Cluster: PREDICTED: similar to polynucleo...    46   6e-04
UniRef50_Q7Z2E3 Cluster: Aprataxin; n=44; Euteleostomi|Rep: Apra...    45   0.001
UniRef50_Q7Q000 Cluster: ENSANGP00000009138; n=2; Culicidae|Rep:...    44   0.002
UniRef50_Q9VHS0 Cluster: CG9601-PA; n=3; Sophophora|Rep: CG9601-...    44   0.003
UniRef50_P61802 Cluster: Aprataxin; n=1; Ciona intestinalis|Rep:...    43   0.006
UniRef50_UPI000155CE00 Cluster: PREDICTED: similar to aprataxin;...    39   0.072
UniRef50_P61799 Cluster: Aprataxin; n=21; Deuterostomia|Rep: Apr...    36   0.89 

>UniRef50_UPI0000D568F1 Cluster: PREDICTED: similar to CG9601-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG9601-PA - Tribolium castaneum
          Length = 522

 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = +1

Query: 250 IKLPXNVQIIVGRNKEXKIXDXXXXXXXXXXKAXXEKXXVXIKQLGVNXSGLXGFALKKD 429
           I LP    +I+GRN+E  I D           A  +   V +K LG + SG  G+AL ++
Sbjct: 35  ITLPHQKPVIIGRNEETGITDLHVSRNHLECTADLDTSKVLVKTLGKSYSGCNGYALMQN 94

Query: 430 EXYEIGHG 453
           E Y + HG
Sbjct: 95  ETYTLKHG 102


>UniRef50_UPI00015B4C59 Cluster: PREDICTED: similar to
           polynucleotide kinase- 3-phosphatase; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to polynucleotide
           kinase- 3-phosphatase - Nasonia vitripennis
          Length = 549

 Score = 46.0 bits (104), Expect = 6e-04
 Identities = 30/108 (27%), Positives = 43/108 (39%)
 Frame = +1

Query: 247 PIKLPXNVQIIVGRNKEXKIXDXXXXXXXXXXKAXXEKXXVXIKQLGVNXSGLXGFALKK 426
           P+ LP  +++ VGR+ + KI D           A  E   V ++QLG    GL GF  ++
Sbjct: 19  PVYLPDKLEVFVGRSVDTKIADPHCSRKQVRLYASYEDHKVSVEQLGSRACGLNGFKTER 78

Query: 427 DEXYEIGHGSXXXXXXXXXXXXXXFXPPPESLTTSQNXTFKRKLEDDS 570
                  HG               F P P+  T S+    KR L  +S
Sbjct: 79  GVRLVAQHGDRLEILYGKHPYKIEFNPAPKVNTESEKPK-KRLLSQES 125


>UniRef50_Q7Z2E3 Cluster: Aprataxin; n=44; Euteleostomi|Rep:
           Aprataxin - Homo sapiens (Human)
          Length = 356

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +1

Query: 241 HAPIKLPXNVQIIVGRNKEXKIXDXXXXXXXXXXKAXXEKXXVXIKQLGVNXSGLXGFAL 420
           H  I+LP    +++GR  E KI D          KA   K  V +KQ+GVN + +    +
Sbjct: 28  HQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVI 87

Query: 421 KKDEXYEIGHG 453
            KD+  ++  G
Sbjct: 88  GKDQEVKLQPG 98


>UniRef50_Q7Q000 Cluster: ENSANGP00000009138; n=2; Culicidae|Rep:
           ENSANGP00000009138 - Anopheles gambiae str. PEST
          Length = 524

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 26/71 (36%), Positives = 37/71 (52%)
 Frame = +1

Query: 241 HAPIKLPXNVQIIVGRNKEXKIXDXXXXXXXXXXKAXXEKXXVXIKQLGVNXSGLXGFAL 420
           + PI++    Q +VGR+ E +I D          KA  E+  V +K LG+N S L G  L
Sbjct: 30  YLPIRINTE-QTMVGRSPETQIQDELCSRKQVCLKANLEQGYVLVKSLGLNPSVLNGKEL 88

Query: 421 KKDEXYEIGHG 453
           K++  YE  HG
Sbjct: 89  KRNIGYEAVHG 99


>UniRef50_Q9VHS0 Cluster: CG9601-PA; n=3; Sophophora|Rep: CG9601-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 523

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 29/106 (27%), Positives = 43/106 (40%)
 Frame = +1

Query: 199 IXSRLXFLRXXLXTHAPIKLPXNVQIIVGRNKEXKIXDXXXXXXXXXXKAXXEKXXVXIK 378
           + +R+  L+     H  I L    +  VGR++E  I D          +   +K  V +K
Sbjct: 18  VAARICTLKPTEPEHHSIHLTAG-ENFVGRSRETGIRDSKCSKRQIQLQVDLKKAVVSLK 76

Query: 379 QLGVNXSGLXGFALKKDEXYEIGHGSXXXXXXXXXXXXXXFXPPPE 516
            LGVN  G+ G  L ++   E+ HG               F PPPE
Sbjct: 77  VLGVNPCGVNGLMLMQNGERELKHGDLVEIVYGRHQFEVVFNPPPE 122


>UniRef50_P61802 Cluster: Aprataxin; n=1; Ciona intestinalis|Rep:
           Aprataxin - Ciona intestinalis (Transparent sea squirt)
          Length = 380

 Score = 42.7 bits (96), Expect = 0.006
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +1

Query: 217 FLRXXLXTHAPIKLPXNVQIIVGRNKEXKIXDXXXXXXXXXXKAXXEKXXVXIKQLGVNX 396
           +L     +H  + LP NV +I+GR  E  I D           +   K  V +K+LG N 
Sbjct: 18  YLECCKSSHPKLPLPHNVPVIIGRTPELGITDKLCSRSQLELTSNCYKRYVLVKRLGANT 77

Query: 397 SGLXGFALKKDEXYEIGHG 453
           S + G  ++K++   +  G
Sbjct: 78  SQINGIDIEKNKSSRLEEG 96


>UniRef50_UPI000155CE00 Cluster: PREDICTED: similar to aprataxin;
           n=1; Ornithorhynchus anatinus|Rep: PREDICTED: similar to
           aprataxin - Ornithorhynchus anatinus
          Length = 408

 Score = 39.1 bits (87), Expect = 0.072
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = +1

Query: 250 IKLPXNVQIIVGRNKEXKIXDXXXXXXXXXXKAXXEKXXVXIKQLGVNXSGLXGFALKKD 429
           I+LP    +++GR+ E +I D          KA  EK  V +KQ+GVN S +    + ++
Sbjct: 16  IRLPHLETVVLGRSPETQITDKKCSRQQVYLKAECEKGYVKVKQMGVNPSSVDSAVIGRN 75

Query: 430 EXYEIGHG 453
              ++  G
Sbjct: 76  RELKMKPG 83


>UniRef50_P61799 Cluster: Aprataxin; n=21; Deuterostomia|Rep:
           Aprataxin - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 324

 Score = 35.5 bits (78), Expect = 0.89
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +1

Query: 238 THAPIKLPXNVQIIVGRNKEXKIXDXXXXXXXXXXKAXXEKXXVXIKQLGVNXSGLXGFA 417
           +H PI+L     + +GR  + KI D          +A   +  V +KQLGVN + +    
Sbjct: 12  SHKPIELHHQQSVTLGRGPDTKIKDKKCSREQVELRADCNRGFVTVKQLGVNPTLVDDVV 71

Query: 418 LKKDEXYEIGHG 453
           + K     I  G
Sbjct: 72  VGKGNQVSIKPG 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,737,391
Number of Sequences: 1657284
Number of extensions: 3019141
Number of successful extensions: 2829
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2829
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)