Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b02
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   2.4  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   3.1  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    23   9.6  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    23   9.6  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    23   9.6  

>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 185 INFI*NYVTRSHILVHNIW 241
           +N + NYV RS  L H++W
Sbjct: 61  LNELDNYVDRSDCLFHSVW 79


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 82  VRTFGNEFTTLKVNTCKPNVY*LSSNPQKK 171
           VRTFGN    L +N   PN   L  N QKK
Sbjct: 251 VRTFGNFADILVINVSSPNTPGL-RNLQKK 279


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 128 ANLMYINCHLIRKKK*YTNINFI*NYVTRSHILVHNI 238
           ++L++ N     KKK   NINF+  Y+  +   +H I
Sbjct: 565 SSLLHANART--KKKELLNINFVRKYIQYAKSRIHPI 599


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 294 FYLSAQNSLLCTNNFILNHML 232
           FYL+A  SL C N F ++ M+
Sbjct: 243 FYLAANMSLNCLNLFWVSKMI 263


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 299 FFFIYLLKTLYFVLIISF*TICYVLI 222
           +FFI     +YF LI+   T+CY  +
Sbjct: 398 YFFIKF--DIYFTLIVLIMTLCYCYV 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,048,428
Number of Sequences: 5004
Number of extensions: 17639
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)