Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b02
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0358 - 22346745-22346804,22347268-22347273,22347439-223475...    26   4.7  
04_04_1525 - 34156813-34157058,34157245-34157435,34157885-341579...    25   8.3  

>02_04_0358 -
           22346745-22346804,22347268-22347273,22347439-22347527,
           22347543-22347672,22347994-22348110,22348232-22348456,
           22348549-22348761
          Length = 279

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 284 LLKTLYFVLIISF*TICYVLIYDSVLRNFK 195
           LLK+L + +  SF +ICY  ++ + +R  +
Sbjct: 115 LLKSLQYAVTTSFGSICYGSLFTAAIRTLR 144


>04_04_1525 -
           34156813-34157058,34157245-34157435,34157885-34157956,
           34158351-34158419,34158531-34158639,34158872-34158987,
           34159117-34159210,34159289-34159460,34159545-34159669
          Length = 397

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 174 YFFLRIR*QLIYIRFASIYFKRSEFVS-ERSDFVKLHFTVSFVKLLHSIII 25
           +F L    ++ Y  F S+      F    R+D++K+HF  S+ +  H +I+
Sbjct: 118 FFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLIM 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,418,966
Number of Sequences: 37544
Number of extensions: 74789
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)