Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b02
         (300 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.7  
SB_55251| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  

>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 273 SLLCTNNFILNHMLCTNI*LR 211
           SL C N F++ H +CT   +R
Sbjct: 13  SLTCKNRFVMEHFICTRCHIR 33


>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 32  IECNNLTKLTVKCNFTKSERSETNSLR 112
           I+CN L   T++CN T+   ++ N+++
Sbjct: 191 IQCNTLQCNTIQCNTTQCNTTQCNTIQ 217


>SB_55251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 300 FFFYLSAQNSLLCTNNFILNHMLC 229
           FF YL   N +    +F+  H+LC
Sbjct: 89  FFLYLQTMNPITMDEHFMPQHLLC 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,986,848
Number of Sequences: 59808
Number of extensions: 103702
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)