Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b02
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   1.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.5  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               20   5.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   5.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILA 130
           +T+   V +II C  ++ LTV   +  S+  E  SL +  +L+
Sbjct: 239 KTLFYTVNLIIPCMGISFLTVLVFYLPSDSGEKVSLSISILLS 281


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 2   ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSL 109
           +T+   V +II C  +T LTV   +  S+  E  SL
Sbjct: 248 KTLFYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSL 283


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILA 130
           +T+   V III C  ++ LTV   +  S+  E  +L +  +++
Sbjct: 243 KTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILIS 285



 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 200 NYVTRSHILVHNIWFKMKLLVQSKEF 277
           N +  +++ V   W+  KL  + KE+
Sbjct: 72  NQIMTTNLWVEQSWYDYKLRWEPKEY 97


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILA 130
           +T+   V III C  ++ LTV   +  S+  E  +L +  +++
Sbjct: 243 KTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILIS 285



 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 200 NYVTRSHILVHNIWFKMKLLVQSKEF 277
           N +  +++ V   W+  KL  + KE+
Sbjct: 72  NQIMTTNLWVEQSWYDYKLRWEPKEY 97


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 2   ETICILV*IIIECNNLTKLTVKC 70
           + I I V ++ EC N  K T KC
Sbjct: 106 KNISIDVKMLSECINANKSTDKC 128


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLR 112
           +TIC    II   + +T+ +  CN + S++   +S +
Sbjct: 341 QTICCKTRIIGRRSWVTRESQICNNSSSDKERNSSFK 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,171
Number of Sequences: 438
Number of extensions: 1087
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)