Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a23
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)              104   9e-23
SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)           32   0.43 
SB_2969| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)                     28   7.0  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score =  104 bits (249), Expect = 9e-23
 Identities = 66/199 (33%), Positives = 99/199 (49%)
 Frame = +2

Query: 122 VRAFYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNL 301
           ++ F++ K   ITGGTGF+G  L+EK+LR    V  +YLL R +      QR++   +  
Sbjct: 4   IQTFFADKVVLITGGTGFLGKVLLEKLLRSCRTVKCIYLLTRSRADHTPQQRIDNMLQTR 63

Query: 302 VFEKLLETNTTDIFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDFQENLR 481
           +F+ + E N  D   K+  I+GD+ EA+LGLSP+D  L+I +V +V HSAAT+ F E LR
Sbjct: 64  LFQNVRE-NDPDQLDKVTAITGDIAEADLGLSPEDMALIIGSVQIVFHSAATVRFDEELR 122

Query: 482 PTVRINLLGTRQVMGLCKEIKNLKVMIHVSSAYVNSYLTXXXXXXXXXXXXXXXXISLVG 661
                       V  +C +       +HVSS Y N                    IS + 
Sbjct: 123 ------------VFFICPQ-----AFVHVSSTYANCDRDVVDEKIYPPSIEPEKLISSLE 165

Query: 662 TLSDEALDEIEPKILKDHP 718
            +SD+ +  I P ++   P
Sbjct: 166 WMSDDMVKAITPYVIDQRP 184


>SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)
          Length = 116

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
 Frame = +2

Query: 155 ITGGTGFVGLCLI-EKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVFEKLLETNT 331
           +TGGTG VG  L+ E  L+ +P    +  + R K+     +R+  +           TN 
Sbjct: 4   VTGGTGLVGSHLLYELALKNLP----IKAIYRTKESLATVKRVFSY---------FTTNV 50

Query: 332 TDIFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDF-QENLRPTVRINLLG 508
            ++F K+  I  D+ +      P   +   E V +V H+AA + F  ++ R   ++N+ G
Sbjct: 51  DELFNKIQWIQADITDV-----PSLDEAFKE-VTLVYHAAALVSFNSKDYRAMRQVNIDG 104

Query: 509 TRQVMGLC 532
           T  ++  C
Sbjct: 105 TANMVNFC 112


>SB_2969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 311 KLLETNTTDIFKKLVPISGD-VGEANLGLSPQDRQLLIENVNV 436
           KLLETN+ D+ +++VP+  D V +       QDR+ + E+  V
Sbjct: 68  KLLETNSADVNRRVVPLLRDAVHQLGENCLKQDRKSVTEDHEV 110


>SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1093

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -3

Query: 202 YFLDKT*T--DKAGSAGYEKVFSAIK 131
           YFLD T +  D+AG AGY K F+A K
Sbjct: 212 YFLDTTRSAEDRAGQAGYNKGFTARK 237


>SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)
          Length = 457

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +2

Query: 89  EGRNKMTEESLVRAFYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEI 268
           E  +  +  S   ++Y+G+N +    TGFVG  L+ + + C  +     L M P+    I
Sbjct: 178 ENTSLSSTASYTGSYYAGENTYGKSNTGFVG--LVNQAMTCYLNSLLQTLYMTPEFRNAI 235

Query: 269 SQRLEE 286
             +L E
Sbjct: 236 YNQLSE 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,633
Number of Sequences: 59808
Number of extensions: 385701
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)