Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a21
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...   103   3e-23
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   4.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   5.4  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   5.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   7.1  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   7.1  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   9.4  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   9.4  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    25   9.4  

>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score =  103 bits (247), Expect = 3e-23
 Identities = 45/113 (39%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
 Frame = +2

Query: 335 DQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNV 514
           D  ++LLS+ +L +L++++D   +++ EVEE+LL++AD+F+++  N AC LAKHR +  +
Sbjct: 337 DNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTL 396

Query: 515 ELRDVQLHLERQWNMWIPGFGNDEL-RPYKRAAVTEAHRQRMALI--RKSIKK 664
           ++RDVQLHLER WN+ +PGF +D++ +  ++   T +++Q+   I   KS+ K
Sbjct: 397 DVRDVQLHLERNWNIRLPGFASDDIVKSARKTGPTPSYQQKQNAIGTAKSLNK 449


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 341 SSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFID 460
           SS+ L+ P+L+++ + +D  +   EEVE++ +   D+  D
Sbjct: 736 SSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSD 775


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 206 IQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQ 373
           +Q V++ ++S +     +  +   H P+G  SQV K  +G + D+SS  +   R Q
Sbjct: 715 LQAVSDSIESAKANRKPL--ALQSHRPLGITSQVPKFEEGYSLDKSSHDIDPERAQ 768


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +2

Query: 146 NNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQ 322
           +N   Q   +  +  +GQ  +Q     M++   Q  S   +P+Q S  G+   V   G+
Sbjct: 533 SNGSFQGPGITHLSEMGQRILQRFQEEMENRMNQTRSESSTPAQQSAAGSSINVDTAGR 591


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
 Frame = +2

Query: 287 MGTQSQVAKVGQGGAGDQSSQLLSR-PRL-QELVREVD--PTVQLDEEVEEMLLQLADDF 454
           + T S    V QG A + +   L++ P L   L+ ++D  P+   D      L  +    
Sbjct: 254 LATNSSANAVLQGSAINNALNALAKDPNLIHSLLTQIDFDPSKSKDGLNLGSLTDVVPPQ 313

Query: 455 IDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGN 580
                +   AL +H  A +  +R  Q  LERQ N  +PG  +
Sbjct: 314 PPQPEHELAALQEHNEAHDAAMR--QYELERQQNAMLPGLAS 353


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 218  NNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGA 331
            N P +SP L+   ++GS S HS     S   + G G A
Sbjct: 1786 NEPRRSPSLKEVLLRGSHSLHSNNDRTSFDIEAGFGTA 1823


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 544 TSVEHVDTRFWKR*TAAIQESSSYRSAQTTDGTHPEIDKKILANKLDINT*T 699
           T++E+   R  +  TA + ESS Y +   TDG   E D ++  ++ +  T T
Sbjct: 284 TAIENAQNRLAEM-TAHLAESSDYDNDDDTDGIINETDYELDTSQSEFATLT 334


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 203 AIQYVNNPMQSPQLQNTSIQGSPSQHS-PMGTQSQ 304
           +++  N   + P LQN SI  SPS+     GTQ +
Sbjct: 22  SVELENVEYEGPSLQNVSICASPSEKKRKWGTQDE 56


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 548 QWNMWIPGFGNDELRPYK 601
           +WN WIP    D+L P K
Sbjct: 457 KWNEWIPDVELDDLHPKK 474


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 155 LAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQ 304
           +++ A  P   T   G I Y  NP  +P   N +    PS  +PMGT S+
Sbjct: 203 ISEPAKCPYCMTERFGVI-YKPNPKLTPFSFNNNPDTLPSNIAPMGTLSK 251


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 203 AIQYVNNPMQSPQLQNTSIQGSPSQH--SPMG 292
           ++++ N+ +Q  +L    I  SPS H  SPMG
Sbjct: 172 SLKHTNDSLQKKELSPHEIAESPSSHSTSPMG 203


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 96  TIIFKHFEISEMSVSIRVYLFFL*DRLNISI 4
           +I+ KHF++SE  V   V    + +RLN SI
Sbjct: 312 SILAKHFKLSEEQVDTVVADMVIQERLNASI 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,928
Number of Sequences: 5004
Number of extensions: 55869
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)