Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a21
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 73 2e-13
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 32 0.41
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 32 0.41
AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein ( Cae... 29 2.9
AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin ... 29 2.9
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF016450-11|AAB65981.1| 317|Caenorhabditis elegans Hypothetical... 29 5.1
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr... 28 6.7
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 73.3 bits (172), Expect = 2e-13
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 9/161 (5%)
Frame = +2
Query: 209 QYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVRE 388
Q P S Q+Q I Q +P Q A V G ++ + +L +L+++
Sbjct: 189 QQHQQPPPSQQIQQPPIPQPQQQQAPP-PQMIPAAVPYGS-------IMEKSKLDDLMQQ 240
Query: 389 VDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNM-WI 565
+ T L+E V+++L++ ADDF+ + ++ AC + K+R +E RD++ L+ +NM +
Sbjct: 241 ISSTTVLEENVKDVLVEYADDFVSSLIDKACKMIKNREVKKIESRDIEFILKNVYNMPVV 300
Query: 566 P-----GFGN--DELRPYKRAAV-TEAHRQRMALIRKSIKK 664
P FG+ + + K V TEAH+QR+AL++K IKK
Sbjct: 301 PRAASHNFGSQTEVIDLSKEKFVPTEAHKQRVALLKKQIKK 341
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 32.3 bits (70), Expect = 0.41
Identities = 33/141 (23%), Positives = 52/141 (36%)
Frame = +2
Query: 236 PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 415
P++Q S + + G + + +VGQ S L S EL E+D V+ E
Sbjct: 2133 PRMQEDSPKSQDIRQKVYGIEDRFRRVGQAEGAAISKALSSALTEPELKLELDEVVRWCE 2192
Query: 416 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDELRP 595
E+ Q + L E +D + LE NM IP D
Sbjct: 2193 MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMAKNMIIPSLKGDAHHD 2252
Query: 596 YKRAAVTEAHRQRMALIRKSI 658
+R A +R+A++R +
Sbjct: 2253 LRRNFSDTA--KRVAMVRDEL 2271
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 32.3 bits (70), Expect = 0.41
Identities = 33/141 (23%), Positives = 52/141 (36%)
Frame = +2
Query: 236 PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 415
P++Q S + + G + + +VGQ S L S EL E+D V+ E
Sbjct: 2133 PRMQEDSPKSQDIRQKVYGIEDRFRRVGQAEGAAISKALSSALTEPELKLELDEVVRWCE 2192
Query: 416 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDELRP 595
E+ Q + L E +D + LE NM IP D
Sbjct: 2193 MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMAKNMIIPSLKGDAHHD 2252
Query: 596 YKRAAVTEAHRQRMALIRKSI 658
+R A +R+A++R +
Sbjct: 2253 LRRNFSDTA--KRVAMVRDEL 2271
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 32.3 bits (70), Expect = 0.41
Identities = 33/141 (23%), Positives = 52/141 (36%)
Frame = +2
Query: 236 PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 415
P++Q S + + G + + +VGQ S L S EL E+D V+ E
Sbjct: 2133 PRMQEDSPKSQDIRQKVYGIEDRFRRVGQAEGAAISKALSSALTEPELKLELDEVVRWCE 2192
Query: 416 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDELRP 595
E+ Q + L E +D + LE NM IP D
Sbjct: 2193 MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMAKNMIIPSLKGDAHHD 2252
Query: 596 YKRAAVTEAHRQRMALIRKSI 658
+R A +R+A++R +
Sbjct: 2253 LRRNFSDTA--KRVAMVRDEL 2271
>AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA for dystrobrevin. ).
Length = 590
Score = 29.5 bits (63), Expect = 2.9
Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Frame = +2
Query: 323 GGAGDQSSQLLSRPRLQELVREVDPTV--QLDEEVEEMLLQLADDFIDTTLNSACALAKH 496
GG G + P + V P V ++ + ++EM LQ D T +AC L
Sbjct: 6 GGGGPREPSSAPSPDHHRAMHSVPPIVASEMQQLIDEMRLQDFDSIRFATYRAACKLRFI 65
Query: 497 RHAPNVELRDVQLHLERQWNMWIPGFGNDELRPYKRAAVTEAHRQRMAL 643
+ V L D+ WNM I F + L V + R + L
Sbjct: 66 QQKTKVHLVDI-------WNM-IEAFRENGLNALPLHTVIKTSRAELLL 106
>AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin
homolog protein 1 protein.
Length = 590
Score = 29.5 bits (63), Expect = 2.9
Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Frame = +2
Query: 323 GGAGDQSSQLLSRPRLQELVREVDPTV--QLDEEVEEMLLQLADDFIDTTLNSACALAKH 496
GG G + P + V P V ++ + ++EM LQ D T +AC L
Sbjct: 6 GGGGPREPSSAPSPDHHRAMHSVPPIVASEMQQLIDEMRLQDFDSIRFATYRAACKLRFI 65
Query: 497 RHAPNVELRDVQLHLERQWNMWIPGFGNDELRPYKRAAVTEAHRQRMAL 643
+ V L D+ WNM I F + L V + R + L
Sbjct: 66 QQKTKVHLVDI-------WNM-IEAFRENGLNALPLHTVIKTSRAELLL 106
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 143 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS 301
S N A P+ G VG + + P P L + GSP + P+GT S
Sbjct: 366 SVNPAPAPAPTPSAGLVGSRKELFSSKP-SGPVLPKPQVNGSPKKWPPVGTTS 417
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +2
Query: 158 AQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQ-GSPSQHSPMGTQSQVAKVGQGGAG 334
AQ+ ++P G GQ Q P SP Q G+P Q P G Q G GA
Sbjct: 213 AQSESIP--GAPGQAGPQGPPGPAGSPGAPGGPGQPGAPGQKGPSGAPGQPGADGNPGAP 270
Query: 335 DQSSQ 349
Q Q
Sbjct: 271 GQPGQ 275
>AF016450-11|AAB65981.1| 317|Caenorhabditis elegans Hypothetical
protein B0238.11 protein.
Length = 317
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +2
Query: 455 IDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDELRPYKRA--AVTEAHR 628
I T LNS +L +++ P+ +QL++++ + + G G + ++ +A A TE +
Sbjct: 146 ISTYLNSEKSLVEYKSMPDRPPTKIQLYIKKH-QIMLKGIGGEPMKNAYKAMNADTEGAK 204
Query: 629 QRMALIRKSIKKY 667
+ L+R++ +Y
Sbjct: 205 ELDELLREASLQY 217
>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
protein ZK593.5 protein.
Length = 1326
Score = 28.3 bits (60), Expect = 6.7
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = +2
Query: 206 IQYVNNPMQSPQLQNTSIQGSPSQ-HSPMGTQSQVAKVGQGGAGDQSSQLLSR-PRLQEL 379
I+ N + ++ + I G Q + MG ++ V ++ D++ + R +L+E
Sbjct: 484 IRVAENLKRQTEIAESKIAGFQEQIDAAMGAEAMVTQLT-----DKNFNMEERIMQLEET 538
Query: 380 VREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLH 538
+ +++ LDE++ E+ Q D + L H H N +RD Q H
Sbjct: 539 IEDMEEARDLDEQLAEVQKQQVKDL----MKEIEQLKIHIHELNGRIRDEQKH 587
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,187,426
Number of Sequences: 27780
Number of extensions: 317016
Number of successful extensions: 1113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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