Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a21
(795 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 108 4e-24
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 105 3e-23
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 105 3e-23
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 29 2.7
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 29 2.7
At1g67140.1 68414.m07638 expressed protein 29 2.7
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol... 29 4.7
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ... 28 8.2
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 108 bits (260), Expect = 4e-24
Identities = 50/156 (32%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 197 QGAIQYVNNPMQSPQLQNTSIQGS--PSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRL 370
Q + + + P + L N + PSQ P+ AK ++L + +
Sbjct: 347 QQPLAHPHQPTRVQGLVNQKVTSPVMPSQ-PPVAQPGNHAKTVSAETEPSDDRILGKRSI 405
Query: 371 QELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQ 550
EL++++DP+ +LD EVE++L +A+DF+++ C+LAKHR + +E +D+ LH+ER
Sbjct: 406 HELLQQIDPSEKLDPEVEDILSDIAEDFVESITTFGCSLAKHRKSDILEAKDILLHVERN 465
Query: 551 WNMWIPGFGNDELRPYKRAAVTEAHRQRMALIRKSI 658
WN+ PGF +DE + +++ T+ H++R+A I+KS+
Sbjct: 466 WNIRPPGFSSDEFKTFRKPLTTDIHKERLAAIKKSV 501
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 105 bits (252), Expect = 3e-23
Identities = 54/151 (35%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Frame = +2
Query: 215 VNNPMQSPQL------QNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQE 376
+N SP++ ++ S+ GS + + GT + QG + ++QLL + ++Q+
Sbjct: 478 INQQQPSPRMLSHAGQKSVSLTGSQPEATQSGTTTPGGSSSQG--TEATNQLLGKRKIQD 535
Query: 377 LVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWN 556
LV +VD +LD +VE++LL++ADDFID+ + AC+LAKHR + +E +D+ LHLE+ +
Sbjct: 536 LVSQVDVHAKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHLEKNLH 595
Query: 557 MWIPGFGNDELRPYKRAAVTEAHRQRMALIR 649
+ IPGF +++ R K T+ H++R+A++R
Sbjct: 596 LTIPGFSSEDKRQTK-TVPTDLHKKRLAMVR 625
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 105 bits (252), Expect = 3e-23
Identities = 54/151 (35%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Frame = +2
Query: 215 VNNPMQSPQL------QNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQE 376
+N SP++ ++ S+ GS + + GT + QG + ++QLL + ++Q+
Sbjct: 478 INQQQPSPRMLSHAGQKSVSLTGSQPEATQSGTTTPGGSSSQG--TEATNQLLGKRKIQD 535
Query: 377 LVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWN 556
LV +VD +LD +VE++LL++ADDFID+ + AC+LAKHR + +E +D+ LHLE+ +
Sbjct: 536 LVSQVDVHAKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHLEKNLH 595
Query: 557 MWIPGFGNDELRPYKRAAVTEAHRQRMALIR 649
+ IPGF +++ R K T+ H++R+A++R
Sbjct: 596 LTIPGFSSEDKRQTK-TVPTDLHKKRLAMVR 625
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting protein
12 (TRIP12) {Homo sapiens}; contains Pfam profiles
PF00632: HECT-domain (ubiquitin-transferase), PF00514:
Armadillo/beta-catenin-like repeat
Length = 1502
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 230 QSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRL--QELVREVDPTV 403
QS QLQ+TSI SPM S+ + Q Q SQ+ + +L Q+ + +
Sbjct: 822 QSSQLQSTSISCQAESSSPMEIDSESSDASQ----LQGSQVEDQTQLPGQQNASSSETSS 877
Query: 404 QLDEEVEEMLLQLADDFIDTTLNSACALAKHR 499
+ ++ V +L +L +D +L A+ H+
Sbjct: 878 EKEDAVPRLLFRLEGLELDRSLTVYQAILLHK 909
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 242 LQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQEL 379
L+N SI GS SP+ + G +G SS +LS RL EL
Sbjct: 106 LENNSISGSIPDLSPLVNLKTLTLSKNGFSGTLSSSILSLRRLTEL 151
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 353 LSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNS 475
LS L+ LV E DP +DE++E+ L Q+ D+ D+ + +
Sbjct: 982 LSVSTLRHLV-EKDPVSVIDEQIEDNLFQMLDEETDSEIGN 1021
>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
oligopeptidase family protein low similarity to
SP|Q99797 Mitochondrial intermediate peptidase,
mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
contains Pfam profile PF01432: Peptidase family M3
Length = 860
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +2
Query: 155 LAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAG 334
L A I G+G + NP + + QN+ I+ ++ S + VG G
Sbjct: 677 LTDLAGKEIISVHGEGIVPATTNPRFAIKCQNSQIESDTTEDPSRSKNSSSSGVGFGSPA 736
Query: 335 DQSS 346
SS
Sbjct: 737 SSSS 740
>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
GYF domain-containing protein contains Pfam domains
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF02213: GYF domain
Length = 659
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +2
Query: 143 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPM---GTQSQVA- 310
S S ++P + GA+Q P+ +P N S+ S + HSP G QS +
Sbjct: 350 SGQSQTSRIDIPVVVN-SAGALQPQTYPIPTPDPINVSVNHSATLHSPTPAGGKQSWGSM 408
Query: 311 KVGQGGAGDQSSQ 349
+ GG+ SSQ
Sbjct: 409 QTDHGGSNTPSSQ 421
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,772,146
Number of Sequences: 28952
Number of extensions: 279509
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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