Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a20
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    28   1.3  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   6.7  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   8.8  

>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +1

Query: 130 STSLSYDSGDEANDTRVPYEQKSDEGNILDEIFTIVPDSESPVVNKMMNSVEFSDVNFIP 309
           ST + Y++  + +    P   K      L++ F    + ++P  NK+ +S++ S +NF P
Sbjct: 255 STGIDYETTGQHSVNSPPSTYKHRRS--LNKSFATRSEPQTPRKNKIRDSLQSSPLNFPP 312

Query: 310 ASGGSTVPAS 339
                 +P S
Sbjct: 313 RDRPPLIPIS 322


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 529 ISDACKVNSKNEYIDVSNCKWRHLKTGF 446
           IS+  ++N   EYIDV +  W+ L+  F
Sbjct: 246 ISNNAQLNIPQEYIDVLDLDWKSLELLF 273


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 259 VNKMMNSVEFSDVNFIPASGGSTVPASETI 348
           +NK+M S+ FS  NF P+    +  +S ++
Sbjct: 202 LNKIMQSLNFSVENFFPSDESVSFSSSSSV 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,726
Number of Sequences: 5004
Number of extensions: 45602
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)