Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a20
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ...    30   1.4  
At3g58480.1 68416.m06518 calmodulin-binding family protein conta...    29   3.3  
At2g14440.1 68415.m01616 leucine-rich repeat protein kinase, put...    29   3.3  

>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
           ornithine--oxo-acid aminotransferase, putative similar
           to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
           (Ornithine--oxo-acid aminotransferase) [Aspergillus
           nidulans] {Emericella nidulans}; contains Pfam profile
           PF00202: aminotransferase, class III
          Length = 475

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 347 IVSEAGTVLPPEAGMKLTSENSTEFIILFTTGDSESG 237
           I  EAG ++PP+  +K   E  T++ +L    + +SG
Sbjct: 234 IQGEAGVIIPPDGYLKAVRELCTKYNVLMIADEVQSG 270


>At3g58480.1 68416.m06518 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 575

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   YWKENIDLIEHNGRNIRYYYLHALVHRDRVQ 95
           +W E ID     G N+++YY HA +H D  Q
Sbjct: 182 HWLEAIDPRHRYGHNLQFYY-HAWLHCDSKQ 211


>At2g14440.1 68415.m01616 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 886

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 235 VPDSESPVVNKMMNSVEFSDVNFIPASGGST 327
           +P +ESP +  + N    SDVNF+   GG T
Sbjct: 36  LPSNESPYIEPLTNLTYISDVNFV--RGGKT 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,062,436
Number of Sequences: 28952
Number of extensions: 225344
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)