Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a19
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22060.1 68414.m02759 expressed protein                             30   1.5  
At5g18240.4 68418.m02143 myb family transcription factor contain...    29   3.4  
At5g18240.1 68418.m02140 myb family transcription factor contain...    29   3.4  
At1g72390.1 68414.m08373 expressed protein                             29   3.4  

>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
 Frame = +1

Query: 109  IAVLQSRIEQLEAKLGLSPEIS-IDGQQGDSVTANLLSAAQAINNATAGHEKLH-EAMQM 282
            I +++++I++L  +L LS E   I  Q+ D     + S  +      A    +  +   +
Sbjct: 760  IRIMKAKIDELGWQLELSTEAKEILKQRLDITLDEVCSLKEEKTTCIAKWNAVALQNQSL 819

Query: 283  ASELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQKA 456
             + L N +  N +  LQK D  +  VL ++    ++  C+ + K+   ++E EA++KA
Sbjct: 820  EANLQNITHENLIL-LQKIDELESVVLESKSWKTNYETCICEKKELAELMEKEAVEKA 876


>At5g18240.4 68418.m02143 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 402

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +1

Query: 118 LQSRI-EQLEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAM-QMASE 291
           +Q R+ EQLE +  L   I   G+   S+           N   AG E     + ++ S+
Sbjct: 157 VQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSK 216

Query: 292 LN-NYSDPNFVENLQKNDLHKQEVLAAEP 375
           ++ +Y D +F+E  +  +LH Q++    P
Sbjct: 217 VSADYPDSSFLEPKELQNLHHQQMQKTYP 245


>At5g18240.1 68418.m02140 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 402

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +1

Query: 118 LQSRI-EQLEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAM-QMASE 291
           +Q R+ EQLE +  L   I   G+   S+           N   AG E     + ++ S+
Sbjct: 157 VQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSK 216

Query: 292 LN-NYSDPNFVENLQKNDLHKQEVLAAEP 375
           ++ +Y D +F+E  +  +LH Q++    P
Sbjct: 217 VSADYPDSSFLEPKELQNLHHQQMQKTYP 245


>At1g72390.1 68414.m08373 expressed protein
          Length = 1088

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 553 ETCGSAANDSSQQLANVAQMVEKVETKMFPK 645
           ++ GS+AN++ QQ  + AQM  K  T   PK
Sbjct: 357 QSVGSSANEAMQQRQHQAQMAAKRRTNSLPK 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,166,731
Number of Sequences: 28952
Number of extensions: 251273
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)