Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a18
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    56   5e-09
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    33   0.058
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    33   0.058
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.7  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   2.2  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    27   2.9  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    27   3.8  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   5.0  
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    26   6.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   6.7  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   6.7  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   6.7  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   8.8  

>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 11/219 (5%)
 Frame = +1

Query: 124 EILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQTSRNEVTYT-PRLL 300
           EILT+ FG  SN+   HFWN QE  F Y       +N +  +R  +    E   T PR  
Sbjct: 3   EILTVTFGRKSNFCWTHFWNTQESYFVYDPNDHAKVNVNTNFRVLKKRDPEAIVTVPREC 62

Query: 301 IADLKGALKTLPQS--GGLSDDAQETDLQWD-TVEKIEEPPPEKNQYLAAIDSVQTTVAD 471
           I D         ++    L++ +      WD  + +I + P + + Y  A+ S +  + +
Sbjct: 63  IYDTPIEFGNTRKNWLEELNESSGGKGTAWDGKLTQIMQTPVDVHPYQEALWS-RDEIHE 121

Query: 472 G---KKDYNL----EENVITWTDYLYPRFHSRTVNVVNEYQHGSNKEAFDIYPTGRGVWK 630
           G   + +Y L     ++V  W+D+      +  +  VN  +  S+  +F +       + 
Sbjct: 122 GNAIESEYELPSIRPKSVKYWSDFNRLFLDTEYLFPVNCSELNSSDFSFQLGVERFHDFD 181

Query: 631 SDYGDLFSDNIRKYVEECDSMQGFQINFDCXDGFAGPSS 747
             + +++ + +R  VEECDS+QGFQ   D    + G +S
Sbjct: 182 KQF-NVWDEGLRPLVEECDSVQGFQAAIDIDTPWGGFAS 219


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = +1

Query: 121 REILTLQFGHYSNYVGAHFWN--IQELSFDYSGT--ATTDLNHD---ILYREGQTSRNEV 279
           REI+ +Q G   N VGA FW+    E   D +G    T++  H+   + + E    +   
Sbjct: 2   REIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGK--- 58

Query: 280 TYTPRLLIADLKGALKTLPQSG 345
            Y PR ++ DL+       +SG
Sbjct: 59  -YVPRAVLVDLEPGTMDAVKSG 79



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 592 AFDIYPTGRGVWKSDYGDLFSDNIRKYVEECDSMQGFQINFDCXDG 729
           A +I+  G     ++  D   D +R+  E CD++QGFQ+      G
Sbjct: 97  AGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGG 142


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
 Frame = +1

Query: 121 REILTLQFGHYSNYVGAHFWNIQELSFDY----SGT----ATTDLNH-DILYREGQTSRN 273
           REI+TLQ G   N +G+ FW  Q+L  ++     GT    AT  ++  D+ + +   +R 
Sbjct: 3   REIITLQAGQCGNQIGSQFW--QQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTR- 59

Query: 274 EVTYTPRLLIADLK 315
              Y PR ++ DL+
Sbjct: 60  ---YIPRAILIDLE 70


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 349  LSDDAQ-ETDLQWDTVEKIEEPPPEKNQYLAAIDSVQTTVADG--KKDYNLEE 498
            +SDD   + ++Q D  E   +PPPE   +L   + ++    +G   KD +LE+
Sbjct: 4055 MSDDVGIDDEIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLED 4107


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 708 YLKTLHAVTFFNIFSDIVTK*ITIIRF-PYSSTSGIDVKSFLITSVLILIYYIHSSRMKT 532
           +   +  +TFFNIF   +   I +I F P+       V + +   +++L+  + + R  T
Sbjct: 119 FFNVIGTITFFNIFITAIAFVICVITFVPHIQWPSWLVLANVGIQLIVLLLLLVARRQAT 178

Query: 531 RIQ 523
           R+Q
Sbjct: 179 RLQ 181


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 328 TLPQSGGLSDDAQETDLQWDTVEKIEEPPPEKNQYLAAIDSVQTTVADGKK 480
           +L ++    DD+   D  W T+E    PP ++   L A+DS   T+   K+
Sbjct: 133 SLSETSNALDDSCFND-DWITIESEFSPPIDRGMTLEAMDSQNDTLFTSKQ 182


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 385 DTVEKIEEPPPEKNQYLAAIDSVQTTVADGKKDYN--LEENVITWTDYL 525
           + +    +P PEK ++L  +  V     D K  YN  +E+  +  TD++
Sbjct: 13  EVISDAPKPTPEKGEFLGRVIRVAFNPIDWKTLYNASIEKGTVGGTDFV 61


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 591 FLITSVLILIYYIHSSRMKTRIQVICPSDYILFK 490
           FL   VL  +Y+  SS+  T IQ +   DY L++
Sbjct: 433 FLDGFVLRNVYFRESSKEATEIQTLIDEDYALYQ 466


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 161 MLVPIFGIYKSSVLITVVLQ 220
           +LVPIF +YK++ L+ ++LQ
Sbjct: 120 LLVPIFVVYKAAPLLKMLLQ 139


>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 349 LSDDAQETDLQWDTVEKIEEPPPEK 423
           + D +  T  QW+ VE   +PPP K
Sbjct: 5   VEDGSFITSSQWENVEASPKPPPRK 29


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 448  SVQTTV-ADGKKDYNLEENVITWTDYLYPRFHSRTVNVVNEYQHGSNKEAFDIYPTGRGV 624
            +++ TV AD     + E+ ++      YP    +T   +N++ HG     F I    RG 
Sbjct: 1938 TIENTVPADPANPDSTEQVLMEAGQVWYPNSAFKTAQAINDFNHGEQLPLF-ILANWRG- 1995

Query: 625  WKSDYGDLFSDNIRKY 672
            +     D+F++ + KY
Sbjct: 1996 FSGGQRDMFNE-VLKY 2010


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 256 GQTSRNEVTYTPRLLIADLKGALKTLPQS 342
           G+T +N VT  PR ++ D++  +  L Q+
Sbjct: 22  GETKQNTVTEVPRTVLQDVEANIAALMQA 50


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 361 RHPRDHHFVVEFLKPLSNQLSVIWVCKLLHSSTF 260
           R P D  F+VE L   +  ++   +C LLHS  +
Sbjct: 606 RLPWDPQFLVESLTDSTIYMAYYTICHLLHSDVY 639


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 184 IQELSFDYSGTATTDLNHDILYREGQTSR 270
           +Q +SF Y GT+   LN DI ++   +SR
Sbjct: 675 VQHMSFQYPGTSKPQLN-DISFQVSLSSR 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,541
Number of Sequences: 5004
Number of extensions: 66613
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)