Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a17
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  96   3e-20
SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   4e-20
SB_1245| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 31   1.4  
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_20789| Best HMM Match : GATA (HMM E-Value=7.4)                      29   4.2  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               28   7.3  
SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               28   9.6  
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)                28   9.6  
SB_35674| Best HMM Match : SH2 (HMM E-Value=0)                         28   9.6  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         28   9.6  

>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 51/187 (27%), Positives = 89/187 (47%)
 Frame = +3

Query: 153 KKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKMVPYGKSTHDKVDGKW 332
           K+  +  KVK+AVYY S  P+ ++F+  QL P       ++ + MVP+G     K    +
Sbjct: 20  KQTKKAEKVKLAVYYNSKNPEFRRFMVAQLYPTSNKIPNILDISMVPFGDGKEIKAKSGF 79

Query: 333 SFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQTSPDKSLDTCLTQVDKMSE 512
            + C +GA+EC  N +QAC +   N  +     +        S DK    C  Q+    +
Sbjct: 80  QYYCTNGAEECLENLIQACAVATENNPEILTSFVGCLSYYDGSVDKIAKYCSNQI---KD 136

Query: 513 SDKLKRCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEKYDKDVETQAFENLKAVVC 692
            +K++ C  + QG  ++     KT  +   ++  P + +N ++ + ++ QA ENL  +VC
Sbjct: 137 YEKVEYCLKNTQGLEVMHYMAKKTRGLQPKMSHSPWITVNGEHSEFIQQQAMENLLQLVC 196

Query: 693 RVATPQP 713
            V    P
Sbjct: 197 TVNWTSP 203


>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
 Frame = +3

Query: 177 VKIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKMVPYGKSTHDKVDGKWSFICHHGA 356
           V I++YYES+C   +  I  QL P ++    ++ + +VPYG +   +   KW F C HG 
Sbjct: 27  VAISLYYESMCGGCRDMIRDQLYPTFQKVGSIMDITLVPYGNAQEYRYGNKWVFNCQHGQ 86

Query: 357 DECYGNKVQACVLKD-RNLQDTEKMEIVIC---LMNQTSPDKSLDTCLTQVDKMSESDKL 524
            EC GN ++ C +   +N+  +     + C    ++  +P  +   C  Q+    +   +
Sbjct: 87  GECEGNIIEVCAINVLKNI--SAYFPFIHCFEQFISSYNPSSTAQYCAKQLG--IDYAPI 142

Query: 525 KRCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEKYDKDVETQAFENLKAVVC-RVA 701
           ++CAS  QG+ L    G +TDA++    +VP V +N ++ ++++ QA  N+  +VC    
Sbjct: 143 EKCASGLQGNELEHEMGVETDALVPRHNYVPWVTLNGEHTEEIQNQATFNMLGLVCDNYQ 202

Query: 702 TPQPSIC 722
             +P+ C
Sbjct: 203 GARPAAC 209


>SB_1245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 377 GASLRPEGPQPPGHGEDGDCNMPHEPDQPRQVFGHVLNSSRQDVGV 514
           G SL P          +GD  +P   D PR++  H+L + R D G+
Sbjct: 11  GRSLNPAIDVGQSRAAEGDYKIPSLRDIPREMNVHILKNMRNDKGI 56


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 364 HSSAPWWQMNDHFPSTLS 311
           HS+  +W  NDHFPS+LS
Sbjct: 585 HSNHRYWYYNDHFPSSLS 602


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +3

Query: 390  VLKDRNLQDTEKMEIVICLMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLAS 569
            V + R+L+D     I   + +  S  + +   +  +   +E  KL+ CA ++ GD+++  
Sbjct: 1155 VTEVRSLKDHISCAIKCLVFHNLSQLRGITREICGLRGFAEKAKLRACAEAQSGDSVVFH 1214

Query: 570  YGDK 581
            Y DK
Sbjct: 1215 YDDK 1218


>SB_20789| Best HMM Match : GATA (HMM E-Value=7.4)
          Length = 471

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 317 LVVRALPIRDHFDFDKSSEVPPDGSQLRRYKLFAVRTKGF 198
           + ++A+  R HFDF     + PD S +R+  L  +R  G+
Sbjct: 209 IAIKAMKWRSHFDFLSDKSIVPD-SFMRKILLKGIRRHGY 247


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 312  DKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVI-CLMNQTSPD---KSLD 479
            ++ D KW     HG DE     +Q C L +R + +  + EI +  ++    P+    SLD
Sbjct: 4004 EEQDNKWELFIKHGTDE-NPLHIQLCFLINRLIGNHVEKEIYLQAMLACRVPEDILPSLD 4062

Query: 480  TCLTQVDKMSESDK 521
             C    D +S SDK
Sbjct: 4063 RCGVAQDLLS-SDK 4075


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 419 GEDGDCNMPHEPDQPRQV 472
           GE+G+C    EP+ PRQ+
Sbjct: 173 GENGECQYSREPEPPRQI 190


>SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 334 DHFPSTLSCVLFPYGTILTLTSPL 263
           D FP   SC  FPY  ++++ SP+
Sbjct: 96  DVFPIACSCRCFPYHVLMSMCSPI 119


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 195  YESLCPDSKKFITTQLAPVWRDFRGLVKVKMVP 293
            +  + PD+ + I  +L P++ D+  ++KVK+ P
Sbjct: 3409 FRVIAPDTIRDINDELVPLFDDYHKVMKVKLSP 3441


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 334 DHFPSTLSCVLFPYGTILTLTSPL 263
           D FP   SC  FPY  ++++ SP+
Sbjct: 246 DVFPIACSCRCFPYHVLMSMCSPI 269


>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
          Length = 533

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 334 DHFPSTLSCVLFPYGTILTLTSPL 263
           D FP   SC  FPY  ++++ SP+
Sbjct: 54  DVFPIACSCRCFPYHVLMSMCSPI 77


>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
          Length = 871

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 507 SESDKLKRCASSEQGDNLLASYGDK 581
           +E  KL+ CA ++ GD+++  Y DK
Sbjct: 17  AEKAKLRACAEAQSGDSVVFHYDDK 41


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 538 PVNKETICSRRTVIKRML**DLSRSCPPLLLTRNTTK 648
           P   E +C+ R  +  +     SRSCPP ++   TTK
Sbjct: 417 PAGNENLCNFRVRVNDVEPPTCSRSCPPDIIKELTTK 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,392,567
Number of Sequences: 59808
Number of extensions: 576025
Number of successful extensions: 1563
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)