Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a16
         (533 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF036487-1|ABO65073.1|  103|Homo sapiens mitochondrial ribosomal...    46   6e-05
BC104652-1|AAI04653.1|  103|Homo sapiens mitochondrial ribosomal...    46   8e-05
BC020642-1|AAH20642.1|  103|Homo sapiens mitochondrial ribosomal...    46   8e-05
AF155653-1|AAF67010.1|  103|Homo sapiens putative ribosomal prot...    46   8e-05
AF151109-1|AAF04788.1|  120|Homo sapiens putative BRCA1-interact...    46   8e-05
AB049654-1|BAB40859.1|  103|Homo sapiens mitochondrial ribosomal...    46   8e-05

>EF036487-1|ABO65073.1|  103|Homo sapiens mitochondrial ribosomal
           protein L36 protein.
          Length = 103

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 207 SVTNFVKP-VIPLVTQISGIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHKQMSM 374
           +V + + P ++P +    G K K  +++RC+ CY V R  R Y+ C   PRHKQ  M
Sbjct: 47  AVRSLLSPGLLPHLLPALGFKNKTVLKKRCKDCYLVKRRXRWYVYCKTHPRHKQRQM 103


>BC104652-1|AAI04653.1|  103|Homo sapiens mitochondrial ribosomal
           protein L36 protein.
          Length = 103

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 207 SVTNFVKP-VIPLVTQISGIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHKQMSM 374
           +V + + P ++P +    G K K  +++RC+ CY V R  R Y+ C   PRHKQ  M
Sbjct: 47  AVRSLLSPGLLPHLLPALGFKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 103


>BC020642-1|AAH20642.1|  103|Homo sapiens mitochondrial ribosomal
           protein L36 protein.
          Length = 103

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 207 SVTNFVKP-VIPLVTQISGIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHKQMSM 374
           +V + + P ++P +    G K K  +++RC+ CY V R  R Y+ C   PRHKQ  M
Sbjct: 47  AVRSLLSPGLLPHLLPALGFKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 103


>AF155653-1|AAF67010.1|  103|Homo sapiens putative ribosomal protein
           L36 protein.
          Length = 103

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 207 SVTNFVKP-VIPLVTQISGIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHKQMSM 374
           +V + + P ++P +    G K K  +++RC+ CY V R  R Y+ C   PRHKQ  M
Sbjct: 47  AVRSLLSPGLLPHLLPALGFKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 103


>AF151109-1|AAF04788.1|  120|Homo sapiens putative BRCA1-interacting
           protein protein.
          Length = 120

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 207 SVTNFVKP-VIPLVTQISGIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHKQMSM 374
           +V + + P ++P +    G K K  +++RC+ CY V R  R Y+ C   PRHKQ  M
Sbjct: 64  AVRSLLSPGLLPHLLPALGFKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 120


>AB049654-1|BAB40859.1|  103|Homo sapiens mitochondrial ribosomal
           protein L36 (L36mt) protein.
          Length = 103

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 207 SVTNFVKP-VIPLVTQISGIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHKQMSM 374
           +V + + P ++P +    G K K  +++RC+ CY V R  R Y+ C   PRHKQ  M
Sbjct: 47  AVRSLLSPGLLPHLLPALGFKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 103


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,232,785
Number of Sequences: 237096
Number of extensions: 1374700
Number of successful extensions: 2154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2154
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)