Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a16
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 454 ISTLNYQGLTGLWLACVKIHVLCG 383
           +S L Y+ +T L    +KIH  CG
Sbjct: 307 LSVLGYKYITPLIQKHLKIHDTCG 330


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 105 FTSGKMQKLFSLV 143
           FTSGK++++F L+
Sbjct: 139 FTSGKLKEMFYLI 151


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 468 ILINP*ALLITRV*LDSGSLVSKSMCYVALVSLTFVCVLETL 343
           ILIN  ALL+  V  +SG  V+  +  +  +++  + + E+L
Sbjct: 225 ILINSVALLVFYVPSESGEKVTLGISALLSMTVFLMTIRESL 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,422
Number of Sequences: 438
Number of extensions: 3071
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)