Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a16
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20180.2 68418.m02404 ribosomal protein L36 family protein co...    40   0.001
At5g20180.1 68418.m02403 ribosomal protein L36 family protein co...    40   0.001
At3g05430.1 68416.m00595 PWWP domain-containing protein contains...    27   5.9  

>At5g20180.2 68418.m02404 ribosomal protein L36 family protein
           contains Pfam profile: PF00444 ribosomal protein L36
          Length = 103

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 261 IKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHKQ 365
           +K++  V++ C  C  V R  RVY++CS  P+HKQ
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQ 35


>At5g20180.1 68418.m02403 ribosomal protein L36 family protein
           contains Pfam profile: PF00444 ribosomal protein L36
          Length = 103

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 261 IKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHKQ 365
           +K++  V++ C  C  V R  RVY++CS  P+HKQ
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQ 35


>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
           Pfam profile:PF00855 PWWP domain
          Length = 965

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 257 RNLRD*WDHRFYEICN 210
           R +RD  DHRFYE+CN
Sbjct: 76  REIRD-SDHRFYELCN 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,710,477
Number of Sequences: 28952
Number of extensions: 212090
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)