Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a14
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.4  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 63  VNYDIK*RRKTLYY*FVLSV 4
           V + I+ RR+TLYY F L V
Sbjct: 184 VTFTIQIRRRTLYYFFNLIV 203


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 63  VNYDIK*RRKTLYY*FVLSV 4
           V + I+ RR+TLYY F L V
Sbjct: 184 VTFTIQIRRRTLYYFFNLIV 203


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 63  VNYDIK*RRKTLYY*FVLSV 4
           V + I+ RR+TLYY F L V
Sbjct: 184 VTFTIQIRRRTLYYFFNLIV 203


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 63  VNYDIK*RRKTLYY*FVLSV 4
           V + I+ RR+TLYY F L V
Sbjct: 184 VTFTIQIRRRTLYYFFNLIV 203


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 63  VNYDIK*RRKTLYY*FVLSV 4
           V + I+ RR+TLYY F L V
Sbjct: 184 VTFTIQIRRRTLYYFFNLIV 203


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 63  VNYDIK*RRKTLYY*FVLSV 4
           V + I+ RR+TLYY F L V
Sbjct: 184 VTFTIQIRRRTLYYFFNLIV 203


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 63  VNYDIK*RRKTLYY*FVLSV 4
           V + I+ RR+TLYY F L V
Sbjct: 252 VTFTIQIRRRTLYYFFNLIV 271


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 63  VNYDIK*RRKTLYY*FVLSV 4
           V + I+ RR+TLYY F L V
Sbjct: 252 VTFTIQIRRRTLYYFFNLIV 271


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 526 LTN*ITIDYYFLTYS 570
           +TN +  DYYF  YS
Sbjct: 21  MTNVLDFDYYFYDYS 35


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 457 STLYFLARRIGISL 416
           STLY +ARR GI L
Sbjct: 496 STLYKIARREGIRL 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,141
Number of Sequences: 438
Number of extensions: 3871
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)