Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a14
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    33   0.21 
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa...    30   1.9  
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa...    30   1.9  
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa...    30   1.9  
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa...    30   1.9  
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain...    29   3.4  

>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/66 (30%), Positives = 37/66 (56%)
 Frame = +3

Query: 357 IIAYRILAESNSEMRIQKTLSDMPILLAKKYSVEQPAFADELDSIDANNLKCTSYKLNKL 536
           I+A +++AE   E  ++K L       +KK S  +PA  D+ DS+D+N+L    ++  ++
Sbjct: 458 IVASKLIAEDMHESVMRKNLHRR----SKKISDIKPASLDQHDSLDSNSLNSFEFQDKEM 513

Query: 537 NNDRLL 554
            N  L+
Sbjct: 514 GNIHLV 519


>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 491

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 576 TYLGLSLLENWKVLTDRNNGL-ISIERNRLNLIEEEAKNRK*SSRTNEAVQTATQSHQIR 752
           T  GL  +EN+ ++T+ +N L + I      L+E+  ++ K  SR  EA+ + ++++ I+
Sbjct: 11  TLFGLDDVENYGLVTEADNSLPLDIHNQVFQLVEKGNQSFK-ESRFEEAISSYSKANSIK 69

Query: 753 YL 758
            L
Sbjct: 70  PL 71


>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 486

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 576 TYLGLSLLENWKVLTDRNNGL-ISIERNRLNLIEEEAKNRK*SSRTNEAVQTATQSHQIR 752
           T  GL  +EN+ ++T+ +N L + I      L+E+  ++ K  SR  EA+ + ++++ I+
Sbjct: 11  TLFGLDDVENYGLVTEADNSLPLDIHNQVFQLVEKGNQSFK-ESRFEEAISSYSKANSIK 69

Query: 753 YL 758
            L
Sbjct: 70  PL 71


>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 486

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 576 TYLGLSLLENWKVLTDRNNGL-ISIERNRLNLIEEEAKNRK*SSRTNEAVQTATQSHQIR 752
           T  GL  +EN+ ++T+ +N L + I      L+E+  ++ K  SR  EA+ + ++++ I+
Sbjct: 11  TLFGLDDVENYGLVTEADNSLPLDIHNQVFQLVEKGNQSFK-ESRFEEAISSYSKANSIK 69

Query: 753 YL 758
            L
Sbjct: 70  PL 71


>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 486

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 576 TYLGLSLLENWKVLTDRNNGL-ISIERNRLNLIEEEAKNRK*SSRTNEAVQTATQSHQIR 752
           T  GL  +EN+ ++T+ +N L + I      L+E+  ++ K  SR  EA+ + ++++ I+
Sbjct: 11  TLFGLDDVENYGLVTEADNSLPLDIHNQVFQLVEKGNQSFK-ESRFEEAISSYSKANSIK 69

Query: 753 YL 758
            L
Sbjct: 70  PL 71


>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related low similarity to clathrin assembly
           protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
           profile PF01417: ENTH domain
          Length = 591

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/105 (23%), Positives = 48/105 (45%)
 Frame = +3

Query: 333 FATAIEDAIIAYRILAESNSEMRIQKTLSDMPILLAKKYSVEQPAFADELDSIDANNLKC 512
           +A  +E+ +  YR+L       R+ K         +K +     +  D L+ + A  L+ 
Sbjct: 143 YALFLEERLECYRVLKYDIEAERLPKASG----AASKTHRTRMLSGEDLLEQLPA--LQQ 196

Query: 513 TSYKLNKLNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISI 647
             Y+L     +   +S+ LI   L L L E++K+    N+G+I++
Sbjct: 197 LLYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINL 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,853
Number of Sequences: 28952
Number of extensions: 251316
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)