Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a12
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    28   1.1  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   3.5  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.5  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   4.6  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    26   4.6  
SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.1  

>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +3

Query: 81  SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 260
           S Y +     N ++ +  YH+   S  ST+           +E P    PD  L+ KL+ 
Sbjct: 50  SSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSSKLQ- 108

Query: 261 LTTKPLCDCSN 293
            + K  C+ S+
Sbjct: 109 -SCKSACENSS 118


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +3

Query: 216 TRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKTFSINVTEDSCDFGTKK 377
           ++  PD  L R+   +T   LC+  +  C  C   ++  ++    D C FG+ +
Sbjct: 2   SKHHPDLVLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQ 55


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
 Frame = +3

Query: 51  QQQCIYIAK-HSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKN------CTKDPNELE 209
           Q Q I I+K  +  T T+DV+NK     +   L   K S K+  N      CT + +E+ 
Sbjct: 241 QMQKIKISKLGTAETQTEDVMNKSSQKENNDILRKHKTSVKFPTNLDALNSCTMENHEIN 300

Query: 210 D--PTRKQPDEQLTR 248
           +   T K  D  +T+
Sbjct: 301 ELTATNKMNDGPITK 315


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 451 LFNTSSKLWQSFMDTSCELSSICSTFFVPKSQESSVTLI 335
           ++ T  +L     D   E SSI S F +PK  E  V  +
Sbjct: 233 MYETCMRLRGKTYDYKVEYSSINSLFLLPKPDEQHVVFV 271


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 243 TRKLKPLTTKPLCDC-SNCTCKDCPD 317
           T + K    KP CDC S C C+DC +
Sbjct: 4   TTQCKSKQGKP-CDCQSKCGCQDCKE 28


>SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +3

Query: 54  QQCIYIAKHSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRK 224
           +Q  + A+  YY     +   +K +F    +     S +YH+  + + NE+ED  R+
Sbjct: 59  EQSKFAAEEQYYLGNYSLA--KKFAFQALDVPTDSSSIEYHRLSSGEINEIEDIIRR 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,820
Number of Sequences: 5004
Number of extensions: 44204
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)