Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a12
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886... 30 1.5
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 29 2.0
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 4.7
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 28 6.2
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988... 28 6.2
01_06_1261 - 35826513-35828941,35829201-35829294 28 6.2
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 6.2
04_04_1673 - 35250564-35251379,35251507-35251749 27 8.2
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 27 8.2
>04_03_0283 +
13887388-13887573,13887711-13887806,13888517-13888637,
13888734-13888840,13888949-13889166,13890219-13890396,
13890492-13890611,13891601-13891687,13892401-13892511,
13892618-13893439
Length = 681
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +3
Query: 63 IYIAKHSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQL 242
IY+++ S YT + + Q LS Y+F+ S +K K +E P R+ DE L
Sbjct: 211 IYLSRSSKYTG--NYVMHQTLSTYYYFMKPSLAPSKVMDVFIKAAEYMEMPVRRSDDEPL 268
Query: 243 TRKLKPLTTKPLCDCSN 293
+ + ++ D N
Sbjct: 269 QKLFVAVRSELNLDLKN 285
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 57 QCIYIAKHSYYTATK-DVLNKQKLSFSYHFLAISKMSTKY---HKNCTKDPNELEDPTRK 224
QCI I +H T+ K D+L Q F L ISK + + N +EDPTR
Sbjct: 521 QCIDIHEHRRSTSHKFDLLLPQDTEFQTPELEISKEAVPQPDEDQELESITNRMEDPTRM 580
Query: 225 QPDEQ 239
P E+
Sbjct: 581 CPVEE 585
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 384 QIDESSHEVSIKDCQSLLDVLNNTRNCTCEIIAKVVRSNVYIHRGKHKVSDIIDETNVAN 563
Q++ SS S+K+ + L V+N+ + + A++++ V+ KH + D I + V N
Sbjct: 549 QLNSSSMTDSLKEALAELYVINSQYDKALSLYAELLKPEVFEFIEKHNLHDAIHD-KVVN 607
Query: 564 VSI 572
+ I
Sbjct: 608 LMI 610
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 177 KNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDC 287
K C + P E DP R + E LT KP+ +C+C
Sbjct: 746 KKCLRVPTEEADPERIEIQEDLTYVEKPVR---ICEC 779
>04_03_0588 +
17595299-17596151,17597519-17597665,17598562-17598837,
17599108-17599805
Length = 657
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 393 ESSHEVSIKDCQSLLDVLNNTRNCTCEIIAKVVRSNVY 506
ES+HE+ C+S +D L+ T IA ++ SN Y
Sbjct: 607 ESNHEIETPLCESYVD-LHQTMGVDINGIANLISSNCY 643
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 144 LAISKMSTKYHKNCTKDPNELEDPTRKQPDE--QLTRKLKPLTTK 272
L I K + +YH + NEL+ + + DE L R L L TK
Sbjct: 511 LEIEKRNREYHLEAMSEMNELKSSSATKDDEIRSLRRMLSSLQTK 555
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 180 NCTKDPNELEDPTRKQPDEQ--LTRKLKPLTTKPLCDCSNCTCKD 308
N TKDPN + R Q EQ LT+ KP++ + N C++
Sbjct: 281 NLTKDPNPMSGKERDQVAEQCNLTKDPKPVSGQKCEQICNEPCEE 325
>04_04_1673 - 35250564-35251379,35251507-35251749
Length = 352
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 162 STKYHKNCTKDPNELEDPTRKQPD 233
S K NCTKDPN L++ PD
Sbjct: 228 SKKLKLNCTKDPNRLQELDVITPD 251
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/80 (23%), Positives = 40/80 (50%)
Frame = +3
Query: 222 KQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKTFSINVTEDSCDFGTKKVEQIDESS 401
+ P + + RKL T + + + +N K C + + + +N T + ++V + ESS
Sbjct: 302 RTPADFVRRKLDSSTAEEVDESANVIQK-CAEYAERY-LNETAEE-----EEVVLVSESS 354
Query: 402 HEVSIKDCQSLLDVLNNTRN 461
E + DC++++ +N N
Sbjct: 355 DESEVWDCETIVSTYSNLDN 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,061,645
Number of Sequences: 37544
Number of extensions: 237250
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -