Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a12
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_56650| Best HMM Match : AgrB (HMM E-Value=0.57)                     29   2.1  
SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)              29   2.1  
SB_25602| Best HMM Match : Endomucin (HMM E-Value=1.1)                 29   2.1  
SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)                     29   2.7  
SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_53774| Best HMM Match : efhand (HMM E-Value=0.012)                  29   3.6  
SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)                      28   4.8  
SB_15227| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  
SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     27   8.4  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 153 SKMSTKYHKNCTKDPNELEDPTR-KQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKT 329
           +K+     K  T D N+ ED TR K+  +     +KP       +   CTC DC  V + 
Sbjct: 610 TKLKCTCPKRPTSDKNK-EDKTRTKETSKSPLPDMKPRFKPCTAEILRCTCGDC--VYRP 666

Query: 330 FSINVTEDSCD 362
           F  N    +C+
Sbjct: 667 FDRNSVAQACN 677


>SB_56650| Best HMM Match : AgrB (HMM E-Value=0.57)
          Length = 246

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 498 LIVLLWQLFHMYSFGCYLTRLANF 427
           L++L W+LFH  +F C + R+ +F
Sbjct: 71  LVILRWKLFHGKNFFCAILRIGHF 94


>SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)
          Length = 856

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 102 DVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTK 272
           D+ +K +    YH L +SK S K H    +D ++ ED    +  +    KL+ +T K
Sbjct: 449 DLSDKMETHGHYHHLRVSKKSEKIHAQKPEDEDD-EDEDDDEETKVSAAKLRGVTRK 504


>SB_25602| Best HMM Match : Endomucin (HMM E-Value=1.1)
          Length = 393

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 150 ISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCK 305
           ISK++T   K+ +   NE++   ++QP  +   K   +  + + D   C CK
Sbjct: 147 ISKLTTLATKSSSNAMNEIQTGAKEQPAAKSIEKGNKMEEQVVHDARECECK 198


>SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)
          Length = 278

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
 Frame = +3

Query: 147 AISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCK--DCPDV 320
           ++++  T +H++  +D  E+ D      +EQ+T+   P TTK  C CSN   K  +  + 
Sbjct: 38  SLTRTETDFHRDHLEDAEEVSDSDESIDEEQVTQ--IP-TTK--CSCSNEIGKIWEAIES 92

Query: 321 LKTFSINVTEDSCDFGTKKVEQIDESSHEVS 413
           L+  S            ++++ I E   E++
Sbjct: 93  LRAASNGSVSSQSQTNAREMQMIRERDAEIN 123


>SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 57  QCIYIAKHSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELED 212
           Q  Y+   SY+ +  DV+    + +  +  ++S +   Y  NC  + N + D
Sbjct: 407 QAYYVIYVSYHNSVSDVIQAYYVIYVSYHNSVSDIIQAYDVNCVSNHNSVSD 458


>SB_53774| Best HMM Match : efhand (HMM E-Value=0.012)
          Length = 918

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 360 DFGTKKVEQIDESSHEVSIKDCQSLLDVLNNTRN-CTCEI 476
           DF TK+ + + + SH  SI++ +++   LN  ++   C+I
Sbjct: 877 DFKTKREDMVSDESHSKSIRNAETVYRSLNTKKDGIICDI 916


>SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)
          Length = 642

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 348 EDSCDFGTKKVEQIDESSHEVSIKDCQSLLDVLN 449
           ++SC    KKV  +  +S  +S KDC SLL   N
Sbjct: 239 KESCSIKFKKVLTLVLNSGRISEKDCDSLLQEYN 272


>SB_15227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 177 KNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDC 311
           +NC  +  + E  T  + DE+    LK + T+ +C  +N    DC
Sbjct: 16  QNCKAEAGQTEAATSPRIDEECIGDLKCILTELICILNNDFIPDC 60


>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +3

Query: 138  HFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCKD 308
            H   IS    KY  NC KD          Q D ++  K+KP TT P    S+    D
Sbjct: 935  HLCLISSNKNKYSCNCPKD-------LFLQLDGKICSKIKPPTTLPTALASSTVATD 984


>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 207 EDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKTFSINVTEDSCDFGTKKVEQ 386
           EDP  K PDE+ T    P +T  L    N   +D  +  +     ++  +     K+ ++
Sbjct: 225 EDPPSKSPDEERTDP-NPNSTTELAPMDNTKDEDIDEFFRNLKTRISAGALSNYQKETDR 283

Query: 387 IDESSHEVSIKD 422
            ++  H   +KD
Sbjct: 284 -EKECHIPPLKD 294


>SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 186 TKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDC 311
           TK P   E PT KQP  +L    +P T +P     + T K C
Sbjct: 625 TKQPTT-ELPTTKQPTTELPTTQEPTTERPTPSGCSDTRKKC 665


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = -1

Query: 418  FMDTSCELSSICSTFFVPKSQESSVTLI 335
            F++ +CE++SI + +FV ++ E + TL+
Sbjct: 932  FVERNCEVTSIAARYFVERNCEVTSTLL 959


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 288  SNCTCKDCPDVLKTFSINVTEDSCD 362
            S  T KDC DVL  F+ NVT  S D
Sbjct: 3418 STITSKDCKDVLTYFNGNVTSLSPD 3442


>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 288 SNCTCKDCPDVLKTFSINVTEDSCD 362
           S  T KDC DVL  F+ NVT  S D
Sbjct: 571 STITSKDCKDVLTYFNGNVTSLSPD 595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,064
Number of Sequences: 59808
Number of extensions: 300029
Number of successful extensions: 987
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)