Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a11
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 204 4e-53
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 1.9
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 2.5
SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 29 3.3
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2) 28 5.8
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8) 27 7.6
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 27 7.6
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 204 bits (498), Expect = 4e-53
Identities = 96/132 (72%), Positives = 116/132 (87%)
Frame = +2
Query: 53 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 232
MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1 MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60
Query: 233 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 412
H+K QQVGKV+QVYRKK+V++I+RIQREKANGAT VGIHPSK IVKLK++KDRK ILD
Sbjct: 61 HFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILD 120
Query: 413 RRAKGRLAALGK 448
R+ + +LA GK
Sbjct: 121 RKNRSKLAEKGK 132
>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 31.9 bits (69), Expect = 0.36
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 53 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 205
MK + Q+ RK+ K H P HIR+ S + K +R+ N + P IRK
Sbjct: 1 MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 325 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 489
W N IC ++C C+V DE N + ++ G TW R +R + G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 499 LRGLHGCGSFLGVFTLVFAKCSQS 428
L GLH CG + VFAKC Q+
Sbjct: 72 LVGLHPCGDLVPTMLKVFAKCDQA 95
>SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 37 GEERQNEVQQAGDFLKK--EKQEEAFQCSFTYKASVDVLSPV*GTKTKIQ 180
G E++ +A ++ KK E + F C Y +V + GTKTKIQ
Sbjct: 163 GNEKKKFTYEALEYAKKSVELDDRDFACHKWYAITVSNVGDFEGTKTKIQ 212
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 416 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQTFYD 273
C G + + ST + L+G+ CR M+L HWP F + + + +T D
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 28 CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTY 126
C F EER QQ G K E+ ++AF + Y
Sbjct: 2583 CPFTEERMESFQQIGRTAKSEESDKAFGFNTIY 2615
>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 319 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 197
L +++ ++YN+L +H+ H N L V T+ N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378
>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
Length = 606
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 59 FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 211
F+ S +K+ +R+F +HI + + +S SK+ ++ K + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 25 PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP 153
PCRFGE N++ F + + A CSF + SP
Sbjct: 1239 PCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASP 1281
>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +2
Query: 119 SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 280
+ ++++ + + K LR+ K+MP R+D+++Q V YK ++VG+ + R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194
>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
Length = 586
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 112 CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 207
CS K ++ L+ + GT KI+ K HA+S++
Sbjct: 72 CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103
>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 457 TLVFAKCSQSALCSAIEDCFAVFI 386
T+ + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 27.5 bits (58), Expect = 7.6
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Frame = +2
Query: 11 ISVLSRVVLAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKS 190
IS +S + S ++ K VTS + N K S+ + + S +SK NVKS
Sbjct: 524 ISKISNIKSVTSGKITNIKSVTSGKISNIKSVTSSKISNIQSVTSGKISKMKSVTSNVKS 583
Query: 191 MPIRKDDEVQVVRGHYKGQQVGKVMQVYRK-KFVVYIERIQREKANGATAYVGIHPSKCV 367
+ K ++ K Q + ++ K R+Q ++GA+A++ + P++
Sbjct: 584 VTSGKISNIKSALPRVKYQSPSPLHRLDGKHPRSPRRIRVQTGVSSGASAHLNVKPTEYA 643
Query: 368 IVKLKM 385
+ K+
Sbjct: 644 YGRTKI 649
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,069
Number of Sequences: 59808
Number of extensions: 358787
Number of successful extensions: 1086
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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