Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a10
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.46 
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                29   2.4  
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)               29   4.2  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           28   5.6  
SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)              28   5.6  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_6251| Best HMM Match : NMU (HMM E-Value=5.7)                        28   7.4  
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      27   9.8  

>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 174 SLCGPPRPSKCGCPPKPGSGKVIVPPADCKPG 269
           S+ GPP P   G PP+ G G+  +PP    PG
Sbjct: 252 SMSGPPIPVHHGMPPQYGPGRRDMPPPGAPPG 283


>SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 459 FPWGDGVKSFYHNEHVN 509
           FPWGDG    +HN+H N
Sbjct: 2   FPWGDGDPPLFHNKHTN 18


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +3

Query: 186 PPRPSKCGCPPKPGSGKVIVPPADCKP--GPICYNPCVP 296
           PP PSK    P P   +  +PPA   P   P   NP +P
Sbjct: 233 PPNPSKAIATPNPPMPETPLPPATPNPFIPPASPNPSIP 271


>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 896

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
 Frame = +3

Query: 231 GKVIVPPADCKPGPIC----YNPCVPRFHHGKDTWK-KYRNFTYFVLLP----LIAIQSF 383
           G++I     C   P C    YNP   R  H K  +  K   + Y  ++P     + +   
Sbjct: 352 GRIIPKGKQCVRLPRCGKRFYNPMKYRCAHNKYIYNPKTHKYCYGRIIPKGKHCVKLPRC 411

Query: 384 NALGHEPPPKGPCRDYEYM-RVRTKRFPWGDGVKSFYHNEHVNHLP 518
             L + P  K  C   +Y+   +T ++ +G  +    H  HV+HLP
Sbjct: 412 GKLFYNPM-KYRCAHNKYIYNPKTHKYCYGRIISISAHCSHVSHLP 456


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 186 PPRPSKCGCPPKPGSGKVIVPPADCKPG 269
           PP P   G PP P  G +  PP    PG
Sbjct: 644 PPNPFFGGIPPPPPGGGMFPPPPPPPPG 671


>SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)
          Length = 108

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 ARRYSLCGPPRPSKCGCP 215
           A RY  CG P P +CG P
Sbjct: 81  ANRYFKCGGPSPEECGVP 98


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 276 CYNPCVPRFHHGKDTWKKYRN 338
           C +P  P   HG++ W + RN
Sbjct: 800 CNDPAAPHVSHGQEDWSRLRN 820


>SB_6251| Best HMM Match : NMU (HMM E-Value=5.7)
          Length = 186

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 135 RPLIWTVEKARRYSLCGPPRPSKCGCPPKPGSGKVIVPP 251
           R +I+   KA  ++ C PP+P    C P     K    P
Sbjct: 87  RRIIYRPMKAFHFACCVPPKPWSATCRPSRNEAKAFDKP 125


>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 195 PSKCGCPPKPGSGKVIVPPADCKPGPICYNPCV 293
           P   G P  PGS  +  PP    P PI YN  V
Sbjct: 297 PGGSGAPGIPGSPGMPGPPGPAGPTPIRYNGTV 329


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 271  GPGLQSAGGTMTFPLPGFGG 212
            G    +AGG+ T P PGFGG
Sbjct: 2328 GFSFTAAGGSSTVPKPGFGG 2347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,121
Number of Sequences: 59808
Number of extensions: 457397
Number of successful extensions: 1082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)