Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a06
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482...    29   3.0  
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698...    29   5.2  
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995...    29   5.2  
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944...    28   9.2  
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624...    28   9.2  

>01_07_0036 +
           40647046-40647100,40647120-40647571,40648135-40648257,
           40648407-40648461,40648613-40648722,40649352-40649531,
           40650003-40650101,40651182-40651280,40652195-40652289,
           40652290-40652378,40652739-40652901,40653299-40653404,
           40655647-40655829,40656059-40656286,40656373-40656486
          Length = 716

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 622 CDCNEDTARSPDSPTAEGAADRSAYLQHSNVPALVSP 512
           CDC  D A + +   A+       Y+ H N+  LV P
Sbjct: 475 CDCEGDCANNKNCSCAQRNGSDLPYVSHKNIGRLVEP 511


>10_07_0144 -
           13367579-13368805,13369540-13369578,13369662-13369826,
           13370083-13370193
          Length = 513

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 604 CPHCNRRFNQGAAERHIPKCANFQFNKPKPAA 699
           C HC R +  G A R++P  A  + NK   AA
Sbjct: 198 CKHCQRYWTAGGAMRNVPVGAGRRKNKNATAA 229


>04_03_0036 -
           9950353-9950379,9950753-9950791,9951021-9951194,
           9951287-9951415,9951782-9952012,9952655-9952732,
           9953035-9953055,9953790-9953855,9953935-9954015,
           9954148-9954920,9955461-9955654,9956723-9956817,
           9958190-9958219,9958334-9958453,9959185-9959262,
           9959428-9959505,9960459-9960488,9960614-9960739,
           9961239-9961379,9963416-9963532,9963619-9963670,
           9963759-9963890,9964668-9964720,9964816-9964911,
           9965255-9965260,9965416-9965561,9966494-9966629,
           9966885-9967038,9968017-9968154,9968268-9968614
          Length = 1295

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -1

Query: 515 AARIAWMNSSCFCRQLLFNCLPLFTLVVDGVAVVLRNLLIKGSASVPAKRCLSTSKGFLF 336
           AA+  W+++           + L T+V DG  VV R  L+K  ASV +    S    F F
Sbjct: 373 AAKATWLSNDIVMFSTKAGEMLLLTVVYDG-RVVQRLDLMKSKASVLSSAVTSIGNSFFF 431

Query: 335 L 333
           L
Sbjct: 432 L 432


>09_06_0010 -
           20193577-20193921,20194014-20194160,20194239-20194495,
           20194619-20194826
          Length = 318

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 379 TEAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFIQAIRAAKQVQAHLNAGG 549
           T  E  +N+L K  A  +  +V   +++     QK+ E + AIR AK   +H  A G
Sbjct: 176 TLTEALMNELVKLDAIAAEGEVKVQRRMQEKRVQKYVESLDAIR-AKNAASHNKASG 231


>07_03_1219 +
           24960043-24960133,24960304-24960336,24962258-24962486,
           24963183-24963309,24963530-24963869,24964806-24965095
          Length = 369

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
 Frame = +1

Query: 109 TNKTRGAMQRPANTTPR-KPPVK----ANSAGSGTPKGRXXXXXXXXXXXXXGDACGVCG 273
           +NKT+ +  R     P+ +PPVK        G    +G                 CG CG
Sbjct: 157 SNKTKSSEPRAKQPKPQPQPPVKNEGREEEGGPDDEEGGGGGGGGGREEEHGETLCGACG 216

Query: 274 RHFASDRIAKHQEICKK 324
             + +D      +IC+K
Sbjct: 217 ESYGADEFWICCDICEK 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,244
Number of Sequences: 37544
Number of extensions: 355932
Number of successful extensions: 1231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)