Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a06
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07) 99 4e-21
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064) 64 1e-10
SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_53564| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_32949| Best HMM Match : SAP (HMM E-Value=1) 30 2.3
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.1
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.1
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_12335| Best HMM Match : Pou (HMM E-Value=0) 28 9.4
SB_12095| Best HMM Match : Vicilin_N (HMM E-Value=0.083) 28 9.4
SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35) 28 9.4
>SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)
Length = 503
Score = 98.7 bits (235), Expect = 4e-21
Identities = 58/122 (47%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Frame = +1
Query: 361 KHRLAGTEAEPFINKLRKTTATPSTTKVN----KGKQLNSNWRQKHEEFIQAIRAAKQVQ 528
+ R T AE I K TT P+ K +G S R EEFI+AIR AK+V
Sbjct: 357 QRRFNPTVAERHIPKCANTTNRPAPPKQRAIPLEGSTGMSGGRMT-EEFIRAIRDAKKVS 415
Query: 529 AHLNAGGKLSDLXXXXXSENPDYVQCPHCNRRFNQGAAERHIPKCANFQFNKPKPAAKRR 708
H+ +GGK+SDL SENPDYV C +C RRFN AERHIPKCAN N+P P +R
Sbjct: 416 QHIASGGKVSDLPPPQYSENPDYVLCRYCQRRFNPTVAERHIPKCAN-TTNRPAPPKQRA 474
Query: 709 *P 714
P
Sbjct: 475 IP 476
Score = 96.3 bits (229), Expect = 2e-20
Identities = 60/159 (37%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Frame = +1
Query: 259 CGVCGRHFASDRIAKHQEICK-KAHSKKRKPFDVLKHRLAGT--EAEPFINKLRKTTATP 429
C CGR F +R+ H C+ K + +P + + +A N R P
Sbjct: 231 CNNCGRTFLPERLEVHMRSCRPKTRTMPVRPGIQGSPNMQNSYGDANNNTNPRRIPPGYP 290
Query: 430 S----TTKVNKGKQLNSNWRQKHEEFIQAIRAAKQVQAHLNAGGKLSDLXXXXXSENPDY 597
T + +S + +EFI+AIR AK+V HL +GGK+SDL SEN DY
Sbjct: 291 KEKTFTFDERSRRTPSSGGSSQGQEFIRAIRDAKKVSQHLASGGKVSDLPPPQYSENADY 350
Query: 598 VQCPHCNRRFNQGAAERHIPKCANFQFNKPKPAAKRR*P 714
V C +C RRFN AERHIPKCAN N+P P +R P
Sbjct: 351 VLCRYCQRRFNPTVAERHIPKCAN-TTNRPAPPKQRAIP 388
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 259 CGVCGRHFASDRIAKHQEICKKAH-SKKRKPFD 354
C CGR F DR+ HQ C + K K FD
Sbjct: 90 CEFCGRTFNPDRLGIHQRSCNPDNPHKPSKNFD 122
>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
Length = 197
Score = 64.1 bits (149), Expect = 1e-10
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +1
Query: 259 CGVCGRHFASDRIAKHQEICKKAHSKKRKPFDVLKHRLAGTEAEPFI 399
C +CGR+F +DR+ KHQ++C K ++KRK FD+ K R AGTE E ++
Sbjct: 134 CSICGRNFQTDRLEKHQKVCAKNSTRKRKAFDMTKQRTAGTEHEKYV 180
>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 579 VGESGLRAVSSLQSQVQPG-RCRATHSEVRKLSVQQTEAGR*TT 707
V ++ + VS++Q VQ RC+AT + VRKLSV T A + T
Sbjct: 679 VNDTSTQGVSTVQGLVQSQPRCQATLNPVRKLSVSATSAQKKNT 722
>SB_53564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 589 PDYVQCPHCNRRFNQGAAERHIPKCANFQFNKPKP 693
P +V HCNR+ Q +HIP+C +F + +P
Sbjct: 96 PHFVNRNHCNRQIRQ-IQHKHIPQCTSFPTWRRRP 129
>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
Length = 269
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Frame = +1
Query: 409 RKTTATPSTTKVNKGKQ--LNSNWRQKHEEFIQAIRAAKQVQAHLNAGGKLSDLXXXXXS 582
RK+ TPS T K K+ ++S+ K E I I+ + A +
Sbjct: 77 RKSRTTPSVTPGRKRKRRIIDSDDEDKTFEAI-TIKQEPECAADSTKKTPKGKQPRKSPT 135
Query: 583 ENPDYVQCPHCNRRFNQGAAERHIPKC 663
PD+ +CP C Q H+ C
Sbjct: 136 RPPDFAECPVCGELILQSKVNSHLDLC 162
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 64 KYSGHRILCLT*VSETNKTRGAMQRPANTT-PRKPPVKANSAGSGTPKGR 210
+Y+GH+ + LT NK+ A + PA T+ PR PP +A + GS G+
Sbjct: 554 RYTGHKDIKLT----LNKS--ASKAPARTSAPRSPPRQAEAIGSSRDVGK 597
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 553 LSDLXXXXXSENPDYVQCPHCNRRFNQ-GAAERHI 654
L+D E P QCPHC++ F Q G RH+
Sbjct: 1185 LTDHLRTHTGERP--FQCPHCSKTFRQSGVMNRHV 1217
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 580 SENPDYVQCPHCNRRFNQGA-AERHIPK 660
+ NPD +CP C + F+ G+ +H+ K
Sbjct: 139 THNPDGFKCPECGKNFSSGSNLRKHVRK 166
>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Frame = +1
Query: 259 CGVCGRHFASDRIAKHQEICKK----AHSKKR------KPFDVLKHRLAGTEAEPFINKL 408
C +CG D++ H I K AH+K K F V+ H L+G ++ FI L
Sbjct: 455 CNICGGELGEDKVLDHCHITGKYRGAAHNKCNLQFRIPKFFPVIFHNLSGYDSHLFIKNL 514
>SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 720 ISWLSSFSGRLRFVELKVCALRNVSLGSALVE 625
ISWL+ RL+ VELK C +V L+E
Sbjct: 503 ISWLAETFPRLKHVELKQCPAVSVKSEEILIE 534
>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 259 CGVCGRHFASDRIAKHQEICKK---AHSKKRK 345
C +CGR + S I+ H++ C+K AH K++
Sbjct: 654 CYICGRAYGSASISIHEKQCQKKWEAHEAKKE 685
>SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 343 KPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFI--QAIRAA 516
KP D L G E L +A ++ +NKGKQ ++ R + F + +RA
Sbjct: 742 KPLDDLSSTSPGAMVERHARALTAVSAYGASVALNKGKQRPASARPSFQAFTDNKPVRAT 801
Query: 517 KQVQAHLN 540
+ A ++
Sbjct: 802 RPFSAKIS 809
>SB_12335| Best HMM Match : Pou (HMM E-Value=0)
Length = 401
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 341 GNPLMYSNIVWLERKQNPLSINCAKPPLLRQLLK*TKASN*TATGDKNTKSSSRQYERRN 520
GN L + I E Q L C PLL++ L+ T AS+ G+K S+ + N
Sbjct: 255 GNVLSQTTICRFEALQLSLKNMCKLKPLLQKWLQETDASSSGHEGEKQQNPSNFAFATHN 314
>SB_12095| Best HMM Match : Vicilin_N (HMM E-Value=0.083)
Length = 501
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 307 QEICKKAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATP---STTKVNKGKQLNSNWR 477
+++CKK + + ++ + A EAE + + R+ + V + ++ ++W+
Sbjct: 285 KDLCKKVQENRAEQEELRRRLKALQEAEQALEEERQCRTKMQERAEQSVERAREEMTDWK 344
Query: 478 QKHEEFIQAIRAAKQVQAHLNAG-GKLSD 561
++ EE RAA V G KL D
Sbjct: 345 RQIEELSGCCRAALTVMYQFQEGSAKLID 373
>SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Frame = -1
Query: 485 CFCRQLLFNCLP-----LFTLVVDGVAVVLRNLLIKGSASVPAKRCLSTSKGFLFL 333
C C L NC + TL+ DGV V + K +ASV G+LFL
Sbjct: 570 CVCADGLINCTIFSLSYVVTLIADGVRSVRNFVFDKTAASVLTSCVCECGDGYLFL 625
>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
Length = 848
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 259 CGVCGRHFASDRIAKHQEICKKA 327
C VCG+ F+ +I H E C KA
Sbjct: 149 CPVCGKSFSPKQINSHVEDCLKA 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,856,791
Number of Sequences: 59808
Number of extensions: 379710
Number of successful extensions: 1330
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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