Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a05
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.4  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   7.2  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 289 GKLSFENFETAIMRKIMALDSDGDIMKSFRL 381
           GK S+ +  T +  K++ +  DGDI+ S RL
Sbjct: 127 GKHSYVHTIT-VPNKLLRISQDGDILYSMRL 156


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 187 IRAEDFRVAIKALGYEPTNEELQTMIRAVDKGD 285
           I   D  +  K+ G+E + EEL  +++  ++ D
Sbjct: 22  IAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQD 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,771
Number of Sequences: 438
Number of extensions: 2854
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)