Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a04
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo... 72 7e-14
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 48 1e-06
SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|... 36 0.006
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc... 28 1.5
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 27 2.0
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 26 4.6
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 26 6.1
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 8.0
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 25 8.0
>SPBC1105.18c ||SPBC887.21c|peptide release
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 72.1 bits (169), Expect = 7e-14
Identities = 31/98 (31%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Frame = +2
Query: 419 KVPKINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARE 598
++ ++ E ++ E F+ G GPGG +NK S + HIPTG +++ +R ++ NR AR+
Sbjct: 43 QLERLQEEDIEETFICGKGPGGQKINKTSIVAQVKHIPTGIIVRSQDTRSREQNRCIARK 102
Query: 599 LLIEKLDDMINGPESVSAQR--KLIEEKKYKRNATKKQ 706
L EK+D+ +G +S+ A++ +++++KK + +K++
Sbjct: 103 RLTEKVDEFKHGNDSLLARKVQRIVKKKKQREKKSKRK 140
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +2
Query: 443 ELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIEKLDD 622
E+ + +R G GG VN+ + V LTHIPTG + SR Q N++KA +L +L
Sbjct: 256 EVKIEVMRSRGAGGQHVNRTESAVRLTHIPTGITVSMQDSRSQHQNKEKAFLVLNSRL-A 314
Query: 623 MINGPESVSAQR 658
+N + A+R
Sbjct: 315 ALNAAKENEAER 326
>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
Isd11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 35.9 bits (79), Expect = 0.006
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +1
Query: 133 MNITRKEVLRLYRNLLMYSKSLKLTDPDYFRRSIKIEFKNNQNLTDLEKISFAYQKGQAL 312
M+++++ V+RLYRN+L SK T +Y R + +FK + +D K + + L
Sbjct: 1 MSVSKQHVVRLYRNILKTSKLFPYTYREYTIRRTRDKFKELKVESDPAKFEQGIKDSEKL 60
Query: 313 L---QRGSVV 333
L QR S++
Sbjct: 61 LEIIQRQSII 70
>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 458 FVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKC 553
F R SGPGG VNK N V+ ++P + C
Sbjct: 53 FSRSSGPGGQNVNK-LNTKVIVNLPFKQLESC 83
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 584 KKARELLIEK-LDDMINGPESVSAQRKLIEEKKYKRNATKKQ 706
K+ E++++ +D+ + ES+SA RK + K Y + T+KQ
Sbjct: 575 KQLYEVILQAVIDNRVVARESISALRKNVTAKCYGGDVTRKQ 616
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +2
Query: 173 IC*CTRNH*NSPTQIIFGAQLKSNSKITKT*LIWRKLASRIRKVRPCCREGQL 331
+C R+ +P++ + G+Q + SK+ T W S V CR L
Sbjct: 64 LCDFERSQILAPSECVRGSQSECVSKLESTSTWWLSFTSHFHDVNHLCRLANL 116
>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 608 EKLDDMINGPESVSAQRKLIEEKKYKRNA 694
EKLDD+I +++S Q ++ + K+N+
Sbjct: 164 EKLDDLIQRSDNLSTQSRMFYKSAKKQNS 192
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 184 YSKSLKLTDPDYFRRSIKIEFKN-NQNLTDLE 276
YS+++ L + + F R I IEF++ + +L D++
Sbjct: 408 YSRTVTLDEMEQFTREISIEFRSISSSLRDVD 439
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 398 KHTIDYSKVPKINECELSEKFVRGSGPG 481
++TI SK+PK+ E E +K + G G
Sbjct: 221 QNTIYESKIPKLIEHETIQKIAKSKGEG 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,108
Number of Sequences: 5004
Number of extensions: 58979
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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