Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a04
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386... 49 3e-06
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 48 6e-06
03_02_0737 + 10820728-10821096,10821320-10821532,10821631-108217... 47 2e-05
05_03_0270 - 11337212-11337418,11337448-11337606,11337696-113377... 40 0.003
01_06_1599 - 38539460-38539480,38539973-38540054,38540185-385402... 39 0.004
07_01_0239 + 1744353-1746365 30 2.1
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 2.7
10_08_0804 + 20700414-20700723,20700813-20700924,20701380-207014... 29 3.6
06_03_1330 - 29375494-29376912 29 3.6
02_04_0266 - 21415912-21418563 29 4.8
>11_06_0607 +
25437897-25438046,25438180-25438236,25438522-25438602,
25438720-25438777,25438888-25438991,25439064-25439115,
25439232-25439281,25440279-25440443,25440531-25440603,
25440714-25440846,25441146-25441203,25441411-25441458,
25441593-25441676,25441803-25441868,25442419-25442502
Length = 420
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +2
Query: 431 INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIE 610
I+ ++ K R G GG VNK V L H PTG I C R Q NR++A +LL
Sbjct: 247 IDPKDIELKTARSGGAGGQNVNKVETAVDLIHKPTGIRIFCTEERSQLQNRERAFQLLRA 306
Query: 611 KLDD--MINGPESVSAQRKL 664
KL + + ES+ QRKL
Sbjct: 307 KLYEIKLREQQESIRNQRKL 326
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 48.4 bits (110), Expect = 6e-06
Identities = 26/63 (41%), Positives = 32/63 (50%)
Frame = +2
Query: 428 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 607
+I E +L F R G GG VNK V + HIPTG ++C R Q N+ KA L
Sbjct: 383 EIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERSQLANKIKALSRLK 442
Query: 608 EKL 616
KL
Sbjct: 443 AKL 445
>03_02_0737 +
10820728-10821096,10821320-10821532,10821631-10821732,
10821755-10821793,10821830-10821967,10822182-10822486,
10822784-10822937,10823279-10823404
Length = 481
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 428 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 607
+I + +L + R GPGG N + V + HIPTG C R Q N+ A +L
Sbjct: 344 QIKDSDLRIERFRSGGPGGQHANCTESAVRIVHIPTGITATCQNERSQHMNKASAMAVLQ 403
Query: 608 EKLDDM 625
+LD +
Sbjct: 404 SRLDQL 409
>05_03_0270 -
11337212-11337418,11337448-11337606,11337696-11337770,
11337926-11338004,11338096-11338144,11338243-11338426,
11338511-11338609,11338742-11338840
Length = 316
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 464 RGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQ 571
R G GG +VN + V +TH+PTGTV+ R Q
Sbjct: 264 RSGGSGGQSVNTTDSAVRITHVPTGTVVAIQDERSQ 299
>01_06_1599 -
38539460-38539480,38539973-38540054,38540185-38540255,
38540359-38540489,38550539-38550614,38551229-38551588
Length = 246
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +2
Query: 431 INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKA 592
+ +CE+ + SGPGG NK + V L H PTG + + R Q NR A
Sbjct: 83 MGQCEMGT--FKASGPGGQHRNKRESAVRLRHRPTGIIAQAVEDRSQHMNRASA 134
>07_01_0239 + 1744353-1746365
Length = 670
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 404 TIDYSKVPKINECELSEKFVRGSGPGGS 487
++ YSK+PKIN +L + G+G G S
Sbjct: 256 SLQYSKLPKINTSDLPDHVTYGTGRGSS 283
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +1
Query: 148 KEVLRLYRNLLMYSKSLKLTDPDYFRRSIKIEFKNNQNLTDLEKISFAYQKGQALLQRGS 327
KEVL ++RNLL K KL DY+ KI + +T + + S Y + QR S
Sbjct: 128 KEVLEIHRNLL--EKVHKLKIQDYYELP-KISASERKKITSIIEDSSIYNEQDPFGQRDS 184
Query: 328 VV*HV 342
H+
Sbjct: 185 SFYHL 189
>10_08_0804 +
20700414-20700723,20700813-20700924,20701380-20701467,
20702530-20702910
Length = 296
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 326 QLCDMFLLTSKYFRNFSPRLAAAFKHTIDYSKVPKINECELSEKFVR-GSGPGGSAVNKN 502
QL F++ + F NF+ LA + ++I+Y + EL R G+GPG +
Sbjct: 138 QLTGFFIINTYMFLNFATSLAVYYPYSINYES----HAIELPSSQERAGAGPGRRPDLVS 193
Query: 503 SNCVV 517
+N VV
Sbjct: 194 TNAVV 198
>06_03_1330 - 29375494-29376912
Length = 472
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 308 PCCREGQLCDMFLLTSKYFRNFSP 379
PCC G+ C M + SKY SP
Sbjct: 306 PCCCSGRACSMSIPCSKYLVELSP 329
>02_04_0266 - 21415912-21418563
Length = 883
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 533 TGTVIKCHTSRCQDDNRK-KARELLIEKLDDMINGPESVSAQRKLIEEKKY 682
TG +KCH +RC+D RK +L + ++ P + S + L +Y
Sbjct: 796 TGGHLKCHITRCEDVPRKFSPWKLSMAPCENFATPPSASSGKNLLSSRHQY 846
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,296,103
Number of Sequences: 37544
Number of extensions: 346279
Number of successful extensions: 702
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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