Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a04
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35775| Best HMM Match : RF-1 (HMM E-Value=0.0061)                   58   9e-09
SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)                    47   2e-05
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)                    29   3.7  
SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)                     29   3.7  
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       28   8.5  

>SB_35775| Best HMM Match : RF-1 (HMM E-Value=0.0061)
          Length = 243

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +2

Query: 413 YSKVPKINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIK 550
           Y  V K+ E ++ E+FV+G G GG  VNK +NCV L H+PTG VIK
Sbjct: 81  YYHVVKLQEEDIEERFVKGWGKGGQKVNKTNNCVELRHVPTGIVIK 126



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +2

Query: 545 IKCHTSRCQDDNRKKARELLIEKLDDMINGPESVSA-QRKLIEEKKYKRNATKKQ 706
           ++CH +R    NR  ARELL+ +LD + NG +S +A Q   I+++K      +KQ
Sbjct: 173 LQCHQTRSLTRNRSIARELLLNQLDQLYNGKDSKAAIQIAKIKKRKATYARRRKQ 227


>SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)
          Length = 309

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 31/54 (57%)
 Frame = +2

Query: 464 RGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIEKLDDM 625
           R SG GG  VN   + V +THIP+G V+     R Q  N+ KA ++L  +L D+
Sbjct: 240 RASGAGGQHVNTTDSAVRITHIPSGMVVSSQEERSQFKNKAKAMQVLRARLYDL 293


>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
          Length = 947

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 118 STNKIMNITRKEVLRLYRNLLMYSKSLKLTDPDYFRRSIKIEFKNNQNLTDLEKISFAYQ 297
           S  KI+++ RK+ L +Y+ +   +K      P+     IKI    N+NL D  K S A  
Sbjct: 566 SNTKILDV-RKKTLDVYKEIPDVNKKNPKKPPNILDEHIKIPNVINKNLYDHRKSSDALN 624

Query: 298 K 300
           K
Sbjct: 625 K 625


>SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)
          Length = 567

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 374 SPRLAAAFKHTIDYSKVPK-INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIK 550
           SP +    +H+ D   VPK INE EL E FV+ S       ++++    +     G++  
Sbjct: 171 SPTIDTRRRHSTDMVSVPKPINE-ELIEDFVKKSPGQRRKTSRDNTDGKINRRNMGSLYS 229

Query: 551 CHTSRCQDDNRKKARE 598
              +R + +N KKA +
Sbjct: 230 PRAARKKLENTKKAAD 245


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 628 DHIIQFFN*QFPGFLPII 575
           D ++ FFN +FP F+P+I
Sbjct: 466 DDVLNFFNKEFPDFIPLI 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,779,552
Number of Sequences: 59808
Number of extensions: 410264
Number of successful extensions: 982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)