Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a04
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93390-2|CAE17950.1| 125|Caenorhabditis elegans Hypothetical pr... 66 2e-11
AF039041-6|AAB94190.1| 389|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 35 0.066
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 35 0.066
AL033514-39|CAA22095.2| 401|Caenorhabditis elegans Hypothetical... 33 0.20
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 30 1.4
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 30 1.4
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 30 1.4
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 30 1.4
AL032637-17|CAD60427.1| 294|Caenorhabditis elegans Hypothetical... 29 4.3
U00047-10|AAA50686.1| 471|Caenorhabditis elegans Hypothetical p... 28 7.5
U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical pr... 27 9.9
U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL117204-24|CAB55152.1| 298|Caenorhabditis elegans Hypothetical... 27 9.9
>Z93390-2|CAE17950.1| 125|Caenorhabditis elegans Hypothetical
protein T23B5.4 protein.
Length = 125
Score = 66.1 bits (154), Expect = 2e-11
Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +2
Query: 428 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 607
K+ + +K++ G GPGG VN N V LTH+PTGTV+K H SR N A E +
Sbjct: 18 KLKNYKFPDKYISGWGPGGQKVNTAQNAVQLTHLPTGTVLKVHESRLLPKNIDIAFERMK 77
Query: 608 EKLDDMINGPESVSAQRKLIE-EKKYKRNATKKQ 706
LD ING Q K ++ K+ K N + Q
Sbjct: 78 FVLDRQINGENCYEEQLKRLQIAKEEKSNKRRVQ 111
>AF039041-6|AAB94190.1| 389|Caenorhabditis elegans Hypothetical
protein W03F8.3 protein.
Length = 389
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +2
Query: 461 VRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDN-----RKKARELLIEKLDDM 625
+R SGPGG VNK S V +TH TG + C R Q N ++ A L+ +++D M
Sbjct: 251 MRASGPGGQNVNKRSTAVRMTHKETGIAVHCMDERFQHLNIQIAYKRLAAILMQKQVDAM 310
Query: 626 INGPESVSAQRKL 664
+ E + ++RKL
Sbjct: 311 L---EKIVSKRKL 320
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 34.7 bits (76), Expect = 0.066
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +2
Query: 410 DYSKVPKINECELSEKFVRGSGPGGS-----AVNKNSNCVVLTHIPTGTVIKCHTSRCQD 574
D S+ IN+ E+SEK GSG G K+S +T + G +K ++ Q
Sbjct: 188 DESEDDFINDEEISEK---GSGKGSEKEESEGSGKDSETEEVT-MKQGQSLKAAMAKAQK 243
Query: 575 DNRKKAR--ELLIEKLDDMINGPESVSAQRKLIEEKKYKRNATKKQ 706
+ +KKA E E DDM + + IEE++ KR TK Q
Sbjct: 244 EQKKKAESDEDWEEDEDDMNADGDETPSDDSDIEERRAKRGETKNQ 289
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 34.7 bits (76), Expect = 0.066
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +2
Query: 410 DYSKVPKINECELSEKFVRGSGPGGS-----AVNKNSNCVVLTHIPTGTVIKCHTSRCQD 574
D S+ IN+ E+SEK GSG G K+S +T + G +K ++ Q
Sbjct: 188 DESEDDFINDEEISEK---GSGKGSEKEESEGSGKDSETEEVT-MKQGQSLKAAMAKAQK 243
Query: 575 DNRKKAR--ELLIEKLDDMINGPESVSAQRKLIEEKKYKRNATKKQ 706
+ +KKA E E DDM + + IEE++ KR TK Q
Sbjct: 244 EQKKKAESDEDWEEDEDDMNADGDETPSDDSDIEERRAKRGETKNQ 289
>AL033514-39|CAA22095.2| 401|Caenorhabditis elegans Hypothetical
protein Y75B8A.5 protein.
Length = 401
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +1
Query: 166 YRNLLMYSKSLKLTDPDYFRRSIK---IEFKNNQNLTDLEKISF 288
Y +L++ + S++ + + FR+ K IEF+NN NL +EK++F
Sbjct: 68 YESLVIRNSSVRTIEKNSFRKMEKLMQIEFENNPNLGTIEKLAF 111
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 288 RVSERSGLAAERVSCVTCSCSLQNILEISVHA*QLPLNIQ*IIPKYQRSMSVNY 449
R +SGL ++ + CSL N+LE+S Q N +P + RS Y
Sbjct: 712 RKISKSGLTFRQIGSTSLRCSLNNLLEMSDRTRQSLSNSLSFLPHFTRSSGSLY 765
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 288 RVSERSGLAAERVSCVTCSCSLQNILEISVHA*QLPLNIQ*IIPKYQRSMSVNY 449
R +SGL ++ + CSL N+LE+S Q N +P + RS Y
Sbjct: 770 RKISKSGLTFRQIGSTSLRCSLNNLLEMSDRTRQSLSNSLSFLPHFTRSSGSLY 823
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 288 RVSERSGLAAERVSCVTCSCSLQNILEISVHA*QLPLNIQ*IIPKYQRSMSVNY 449
R +SGL ++ + CSL N+LE+S Q N +P + RS Y
Sbjct: 823 RKISKSGLTFRQIGSTSLRCSLNNLLEMSDRTRQSLSNSLSFLPHFTRSSGSLY 876
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 288 RVSERSGLAAERVSCVTCSCSLQNILEISVHA*QLPLNIQ*IIPKYQRSMSVNY 449
R +SGL ++ + CSL N+LE+S Q N +P + RS Y
Sbjct: 742 RKISKSGLTFRQIGSTSLRCSLNNLLEMSDRTRQSLSNSLSFLPHFTRSSGSLY 795
>AL032637-17|CAD60427.1| 294|Caenorhabditis elegans Hypothetical
protein Y43F8C.19 protein.
Length = 294
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 708 FCFFVAFRLYFFSSISFLCADTLS 637
FCF V+F LYF S + L TLS
Sbjct: 191 FCFLVSFTLYFTSILYILKTKTLS 214
>U00047-10|AAA50686.1| 471|Caenorhabditis elegans Hypothetical
protein ZK418.2a protein.
Length = 471
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/76 (19%), Positives = 33/76 (43%)
Frame = +2
Query: 224 GAQLKSNSKITKT*LIWRKLASRIRKVRPCCREGQLCDMFLLTSKYFRNFSPRLAAAFKH 403
G Q++SN + + L+ + V+ C +EG LC +L + + +
Sbjct: 106 GQQIRSNCCVVQHNLVMHSFVYSLAVVKDCKQEGFLCKFSVLPVSHTYRYPIEMKKGGVP 165
Query: 404 TIDYSKVPKINECELS 451
+VP++N+ + +
Sbjct: 166 VTFKPEVPELNDVKFT 181
>U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical
protein C49H3.6b protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 581 RKKARELLIEKLDDMIN-GPESVSAQRKLIEEKK 679
R KA +++++ +D GP S ++R+LIEE K
Sbjct: 237 RVKAEQIMLQNQNDPTKPGPSSALSERELIEELK 270
>U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical
protein C49H3.6a protein.
Length = 552
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 581 RKKARELLIEKLDDMIN-GPESVSAQRKLIEEKK 679
R KA +++++ +D GP S ++R+LIEE K
Sbjct: 237 RVKAEQIMLQNQNDPTKPGPSSALSERELIEELK 270
>AL117204-24|CAB55152.1| 298|Caenorhabditis elegans Hypothetical
protein Y116A8C.37 protein.
Length = 298
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 578 NRKKARELLIEKLDDMINGPESVSAQRKLIEEKKYKRNATKKQ 706
NR+ + +E+L +++ E S +L EEKK +R KK+
Sbjct: 15 NRQARKVKKVEELGKVVDRKEMDSPLGRLYEEKKEERKEEKKE 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,891,566
Number of Sequences: 27780
Number of extensions: 332313
Number of successful extensions: 863
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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