Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a02
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18) 33 0.19
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13) 30 1.7
SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55) 29 5.3
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25) 29 5.3
SB_45878| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7) 28 7.0
SB_34656| Best HMM Match : Ribosomal_L30_N (HMM E-Value=4) 28 7.0
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 28 7.0
SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1) 28 7.0
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_1448| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7) 28 7.0
SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5) 28 7.0
SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4) 28 7.0
SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4) 28 7.0
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 28 7.0
SB_16936| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2) 28 7.0
SB_9961| Best HMM Match : Borrelia_orfA (HMM E-Value=2.3) 28 7.0
SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
Length = 865
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 292 QKLCNDIVQADDRPNTTPPRVKLSKITFQSTNKVNGKIYRSVTLEKRKVTGKPAPH 459
+KL N + Q D++P P VKLS+ ++ K G S E+ KPA H
Sbjct: 133 EKLKNRLHQIDEKPEVQTPEVKLSRSDSETPQKSPGVREMSKMFEREISLLKPADH 188
>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
Length = 916
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 373 FQSTNKVNGKIYRSVTLEKRKVT---GKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTG 543
+ STN +N YR + EK ++ + + E+ K + ++++ +KI + N L
Sbjct: 113 YGSTNNINKSRYRKLLQEKEELERSYERESRERESSKERLQREYEEKIAYEDKFNQLSNT 172
Query: 544 PLRCDNECVTL 576
R +NE ++L
Sbjct: 173 LARYENELMSL 183
>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
Length = 607
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 361 SKITFQSTNKVNGKIYRSVTLE-KRKVTGKPAPHAEN-VKRKPEKKFNQKIFADIA--VN 528
+K+T++ NKV K+ ++VT + VT K N V K K +K+ ++ VN
Sbjct: 199 NKVTYKVNNKVTNKVTKNVTNKVTNNVTNKVTNEVTNKVNNKVTNKVTKKVTNNVTNKVN 258
Query: 529 TLVT 540
VT
Sbjct: 259 NNVT 262
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 361 SKITFQSTNKVNGKIYRSVTLE-KRKVTGKPAPHAEN-VKRKPEKKFNQKI 507
+K+T TNKV K+ VT + KVT K A N V K K K+
Sbjct: 263 NKVTNNVTNKVTNKVANKVTNKVANKVTNKVANKVTNKVANKVTNKVTNKV 313
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 361 SKITFQSTNKVNGKIYRSVTLE-KRKVTGKPAPH-AENVKRKPEKKFNQKI 507
+K+T++ NKV K+ V + KVT K A NV K K K+
Sbjct: 451 NKVTYKVANKVTNKVTNKVANKVTNKVTNKVANKLTNNVTNKKTNKMTNKV 501
>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
Length = 312
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 448 PAPHAENVKRKPEKKFNQ-KIFADIAVNTLVTGPLRCDNECVTLIRKRGDSLNCRCPSKQ 624
P K P K N K A+NT T P + N C T++ K ++ P+K
Sbjct: 220 PTKAINTCKTVPTKAINTCKTVPTKAINTCKTVPTKAINTCKTVLTKAINTCCRTVPTKA 279
Query: 625 VN 630
+N
Sbjct: 280 IN 281
>SB_45878| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7)
Length = 184
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 86 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 143
Query: 586 RGD 594
+GD
Sbjct: 144 KGD 146
>SB_34656| Best HMM Match : Ribosomal_L30_N (HMM E-Value=4)
Length = 184
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 86 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 143
Query: 586 RGD 594
+GD
Sbjct: 144 KGD 146
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 821 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 878
Query: 586 RGD 594
+GD
Sbjct: 879 KGD 881
>SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
Length = 530
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 429 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 486
Query: 586 RGD 594
+GD
Sbjct: 487 KGD 489
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 399 SINFVCTLEGNFTEFHSRWCCVWTIVCLH 313
S N +G+F EFH+R C T+ C H
Sbjct: 1052 SCNMNLEQKGSFKEFHTREGCNATLTCYH 1080
>SB_1448| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7)
Length = 166
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 68 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 125
Query: 586 RGD 594
+GD
Sbjct: 126 KGD 128
>SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)
Length = 518
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 420 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 477
Query: 586 RGD 594
+GD
Sbjct: 478 KGD 480
>SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)
Length = 623
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 529 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 586
Query: 586 RGD 594
+GD
Sbjct: 587 KGD 589
>SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)
Length = 934
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 836 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 893
Query: 586 RGD 594
+GD
Sbjct: 894 KGD 896
>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
Length = 1582
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 152 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 209
Query: 586 RGD 594
+GD
Sbjct: 210 KGD 212
>SB_16936| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2)
Length = 399
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 301 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 358
Query: 586 RGD 594
+GD
Sbjct: 359 KGD 361
>SB_9961| Best HMM Match : Borrelia_orfA (HMM E-Value=2.3)
Length = 358
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 YRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVTLIRK 585
YR EK+ + K H E++KRK E+ Q + T T L+ ++ T
Sbjct: 260 YRQSLAEKKSIEAKT--HKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEM 317
Query: 586 RGD 594
+GD
Sbjct: 318 KGD 320
>SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 448 PAPHAENVKRKPEKKFNQKIFADIAVNT 531
P A N ++P KKFN K D +NT
Sbjct: 503 PLLQARNAPKQPRKKFNIKELCDKLINT 530
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,674,244
Number of Sequences: 59808
Number of extensions: 331729
Number of successful extensions: 798
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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