Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12o08
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.61 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 148 C*PYVILIKPTK*VTIQI 201
           C P V+++ PT+ +TIQI
Sbjct: 272 CEPQVVIVSPTRELTIQI 289


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 414 DTETIINSQSSVILQPMEEALVSNKRTADELFGDI 518
           D ETII   S   L+P +E +   +RT  + + ++
Sbjct: 112 DIETIIRRNSRYPLRPPQEVISHYRRTRRDRYTNL 146


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 536 IKVYIFNIAEQFICSTFIGHQGLFHWLQYD*RLTIDDGFGISIFVW 399
           +K+ +  IA  FIC T      L++W+  +    ID      +F++
Sbjct: 259 LKMTVIIIAVFFICWTPYYVMSLWYWIDRNSAYKIDQRIQKGLFLF 304


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 546 FLYHQSLYLQYRRTIHLQYVYWTPR 472
           FLY  SL    R TI L  V  +PR
Sbjct: 24  FLYFNSLVRFRRFTIELDKVLESPR 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,364
Number of Sequences: 438
Number of extensions: 2786
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)