Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12o01
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 182 4e-47
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 30 0.28
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 30 0.28
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 29 0.65
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.65
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 29 0.86
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.86
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.86
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 28 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.5
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 28 1.5
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 2.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.6
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 27 3.5
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.5
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 3.5
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 27 3.5
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 26 4.6
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1... 26 4.6
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 6.1
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.0
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 8.0
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.0
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 182 bits (443), Expect = 4e-47
Identities = 90/161 (55%), Positives = 110/161 (68%), Gaps = 1/161 (0%)
Frame = +3
Query: 228 RPEHQAPPEVFYNDEEARKYTQNSRIIEIQGQMTERXXXXXXXXXXXXXXXXXIGCGSGL 407
RPEH APPE+FYND EA KY+ N+RI IQ +M+ER IGCGSG+
Sbjct: 3 RPEHIAPPEIFYNDVEAGKYSTNTRIQSIQTEMSERALELLDAEGPSFILD--IGCGSGI 60
Query: 408 SGTVLEENGHMWIGMDISSSMLDVAVE-RDTEGGLVLADMGEGVPFRAGCFDGAVSVSAI 584
S + E GH+ +GMDIS SML VA+E ++ EG L+L DMG GVPFR G FDG +S+SAI
Sbjct: 61 STQIGESQGHVVVGMDISPSMLSVALESQEIEGDLLLCDMGTGVPFRPGTFDGVISISAI 120
Query: 585 QWLFNADKKTHNPVKRLNKFFTTLYSSLSRSARAVFQFYPE 707
QWL NADK + P +RLN+FF TLY S+ R RAV Q+YPE
Sbjct: 121 QWLLNADKTCNVPQRRLNRFFQTLYISMKRGGRAVMQYYPE 161
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 556 KQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHI 437
KQP+ N P+PI+ + + ST++SS + + P+ +
Sbjct: 186 KQPSFNSNPAPITTSSATHTSQFSTSSSSSVNSVHTPVMV 225
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 30.3 bits (65), Expect = 0.28
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = -2
Query: 562 PSKQPALNGTPSPISARTK-----PPSVSL---STATSSIEDDMSIPIHICPFSSSTVPD 407
P KQPA P P +A + PP+VS+ S + S+ + P S+T P
Sbjct: 1011 PPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQ 1070
Query: 406 NPEPHPISNNKQDESSGNR 350
P+P P+S S+ +R
Sbjct: 1071 IPQPPPVSTALPSSSAVSR 1089
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 29.1 bits (62), Expect = 0.65
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +3
Query: 387 IGCGSGLSGTVLEENGHMWIGMDISSSMLDVAVERDTEGGLVLAD-MGEGVPFRAGCFDG 563
+GCG G+ L +G+D S M+ A E ++ + + + + FD
Sbjct: 40 LGCGDGVLTNELVSQCRRVVGIDASPDMIKAARELGLNAYVIPGEKLLDASEIPSESFDV 99
Query: 564 AVSVSAIQWLFNADKKTHNPVKRLNKFFTT 653
S +A+ W+ K +K +++ T
Sbjct: 100 VFSNAALHWIMRQPKNRPIVMKGVSRVLRT 129
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.65
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -2
Query: 529 SPISARTKPPSVSLSTAT-SSIEDDMSIPIHICPFSSSTVPDNPEPHPISNNKQDESSGN 353
S +S T+P S + T T SSI + P SS +VP + P S+ SS
Sbjct: 431 SYVSTVTQPASTRVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSA 490
Query: 352 RSNSKHLSVICPWISMI 302
S LS +S +
Sbjct: 491 SSPQSTLSTSSEVVSEV 507
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -2
Query: 583 IADTDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDN 404
I+ + T+ + A +PS IS+ S LS+ T S M I SSS + +
Sbjct: 594 ISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSS 653
Query: 403 PEPHPISNNKQDESS 359
PIS++ SS
Sbjct: 654 ISTIPISSSLSTYSS 668
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 28.7 bits (61), Expect = 0.86
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -2
Query: 583 IADTDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPF-SSSTVPD 407
+ +T P+ A NG S+ + P S ++ S++ S P F SSS+ P
Sbjct: 202 VTGIETIPAYVEATNG-----SSTVRSPHAKRSLSSISVKSSTS-PFSGSKFLSSSSYPH 255
Query: 406 NPEPHPISNNKQDESSGNRSNSKHL 332
PE H SN+ S G+ ++++
Sbjct: 256 TPEAHLNSNHISPASFGSGIRTRNI 280
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.86
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = -2
Query: 574 TDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTV--PDNP 401
T + PS + + T S +S+ + + S S+++SSI S +SST+ +
Sbjct: 237 TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSS 296
Query: 400 EPHPISNNKQDESSGNRSNSKHLSVICPWISMILEFCVYFLASSSL*KTSGGAWCSGLF 224
P S + SS + S+S ++ +S F +SSS +S + S F
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSF 355
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = -2
Query: 604 SALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFS 425
S L++ + + ++PS + T S +S + P + S S++TSS S S
Sbjct: 208 SYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSS--------S 259
Query: 424 SSTVPDNPEPHPISNNKQDESSGNRSNSKHLS 329
SST + I ++ SS S S +S
Sbjct: 260 SSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 0.86
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -2
Query: 538 GTPSPISARTKPPSVSLSTATSSIED-DMSIPIHICPFSSSTV--PDNPEPHPIS 383
GTP+ SA PPS+ S + P I P S+ TV P N P PI+
Sbjct: 222 GTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIA 276
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -2
Query: 550 PALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEPHPISNNKQ 371
P T S + + S+S S++TSS SIPI S S +P + + S++
Sbjct: 62 PISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSSDSFIPSSSQTISASSSTT 121
Query: 370 DESSGNRSNSKHLS 329
D + S S +S
Sbjct: 122 DNVIVSSSISSTVS 135
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 547 ALNGTPSPISARTKPPSVSLSTATSSIEDDMS-IPIHICPFSSSTVPDNPEPHPI 386
A+N PS R SVS + SSIED+ S +P+ ++ P N P +
Sbjct: 1393 AVNARPSAPERRDSFGSVSSGSNVSSIEDETSTMPLKASQPTNPGAPSNHAPQVV 1447
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -2
Query: 583 IADTDTAPSKQPALNGTPSPISARTKPPSVSLS-TATSSIEDDMSIPIHICPFSSSTVPD 407
+ T+T PS+ P + G P A T P S ++ + PI PF+ + P
Sbjct: 124 VGKTNTFPSQVPNMFGPPLYHPAATAPSEFMPSIPGFGNLPNPAMPPIPFLPFNPAAQPP 183
Query: 406 NPEP 395
P P
Sbjct: 184 FPPP 187
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = -2
Query: 571 DTAPSKQPALNGTPSP--ISARTKPPSVSLSTATSSI--EDDMSIPIHICPFSSSTVPDN 404
+ APS +NG P P I + P +L +T+ + E D+ I IC + S D
Sbjct: 725 EKAPSLMTMVNGGPVPGDIGEASIPVVQNLQPSTAHVDPESDLGRVIKICDWYQSPSSDV 784
Query: 403 PEPHPISNNKQDE 365
P+ N +E
Sbjct: 785 LLSKPLQLNSSEE 797
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
3|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/62 (19%), Positives = 32/62 (51%)
Frame = -3
Query: 492 LSLQQHQALKMICPSQSTYVHFLLALYQIILNHIQYPTTSKMNLPVIEVILSISQSFVLG 313
+SL++ + + +C +++ + L+ + ++ +HI + K+N + +L + VL
Sbjct: 819 ISLREPELILKVCQTKNINIAMLIGNWILLNDHINHSKDRKLNTLALSSLLRTNHPDVLA 878
Query: 312 FL 307
L
Sbjct: 879 VL 880
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.0
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = -2
Query: 568 TAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVP-DNPEPH 392
T + P ++ T S S + PSV+LST++++ + S P S S+ P D
Sbjct: 299 TTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSI 358
Query: 391 PISNNKQDESSGNRSNSKHLSVICPWISMILEFCVYFLASSSL*KTS 251
+N + +S ++ ++ P S + + SSS+ TS
Sbjct: 359 SFANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTS 405
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 481 ATSSIEDDMSIPIHICPFSSSTVPDNPEPHPISNN 377
+TSS D+ P+HI P N P+ + NN
Sbjct: 136 STSSFVDEAEFPVHI-PGLEDATSSNMSPNSVQNN 169
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 420 ALYQIILNHIQYPTTSKMNLPVIEVILSISQSFVLG 313
+ Y+IIL+ T+ + P+IE+IL I F++G
Sbjct: 488 SFYRIILSSNSLSTS--LTYPLIEIILPIKNGFLMG 521
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/85 (23%), Positives = 32/85 (37%)
Frame = -2
Query: 595 NNHCIADTDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSST 416
N+ D P PA NG +P++A +V+ S ++ S+P F
Sbjct: 266 NSSTPTDQTLRPPNPPAANGNATPVTAVNNVSAVADSPQSTGSSVSSSLPTLSLDFKQEY 325
Query: 415 VPDNPEPHPISNNKQDESSGNRSNS 341
+N H +S S + S S
Sbjct: 326 SGNN---HDMSGLSSSLSKSHNSTS 347
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 3.5
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 610 FLSALNNHCIADTDTAPSKQPALNGTPSPISARTKPPSVSLS-TATSSIEDDMSIPIHIC 434
F S L+N + D+ +NG+ SP+S + V + T S+I +
Sbjct: 260 FSSPLDNPALHTVDSTN-----VNGSLSPLSNSSSINQVHQNETHGSTISVPNPNLSQMG 314
Query: 433 PFSSSTVPDNPEPHPISNNKQDESS 359
P SS+VP N P+P N +S
Sbjct: 315 PSHSSSVPSNLSPNPAQNENPSTTS 339
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 591 LFNADKKTHNPVKRLNKFFTTLYSSLSRSARAVF 692
L++ KK +L FTTLY++ ++ AVF
Sbjct: 585 LYDLRKKLKQSAPKLQNIFTTLYTAWCHNSIAVF 618
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 4.6
Identities = 21/81 (25%), Positives = 41/81 (50%)
Frame = -3
Query: 438 YVHFLLALYQIILNHIQYPTTSKMNLPVIEVILSISQSFVLGFL*SWSFVYTF*PLHHYK 259
++HFL + + H+ +P T + L IE+ L + ++ L + ++Y + H
Sbjct: 32 FLHFLKI--PVYMTHLGFPITPTVCL--IEM-LGLLLLLLIPALFTLIWIYKYIEPH--- 83
Query: 258 KLQAVPGVLVFLTSYINIRIT 196
L ++PG+ VFL Y+ +T
Sbjct: 84 SLISIPGIFVFLGLYVPFVVT 104
>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +3
Query: 390 GCGSGLSGTVLEENGHMWIGMDISSSMLDVAVER-DTEGGLV---LADMGEGVPFRAGCF 557
GC + L G+ +G+DIS + A+++ +E V D F+ G F
Sbjct: 17 GCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEKSNVNFNQRDFSRLNEFK-GHF 75
Query: 558 DGAVSVSAIQWLFNADKKTH 617
D + + + N+D + H
Sbjct: 76 DTVIDIGCFHSILNSDHEPH 95
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -2
Query: 535 TPSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEPHPISNNKQDESS 359
TP I ++ PPS S S+ SS D P ++ P + P P ++ S+
Sbjct: 139 TPKQIYSKHSPPSTSTSSIVSSSYGD--APSYLAPSKPNRSPPLKPEDPFASFNSSASA 195
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 580 ADTDTAPSKQPALNGTPSPISARTKPPSVSLSTATSSIEDDMSIP 446
A+ AP+ TP+ + PP +S S+ T +D S+P
Sbjct: 396 ANNFLAPTSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSLP 440
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 544 LNGTPSPISARTKPPSVSLST 482
+ G PSP + T PP +S+ST
Sbjct: 229 VKGHPSPATVTTLPPFMSMST 249
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 532 PSPISARTKPPSVSLSTATSSIEDDMSIPIHICPFSSSTVPDNPEPHP 389
P P + T P+ + T+ + + S P+ + P + ST+ NP P P
Sbjct: 285 PPPHGSTTPLPAAASYTSMNMKQSSASHPV-LQPPAPSTLQFNPSPSP 331
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 399 SGLSGTVLEENGHMWIGMDISSSM 470
+ +GTV + NG++ G+D SSS+
Sbjct: 217 ASFTGTVYDSNGNVIKGLDTSSSL 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,062
Number of Sequences: 5004
Number of extensions: 63018
Number of successful extensions: 257
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -