Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12n07
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    24   1.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +1

Query: 190 ITYVMLNRILPRTCSLLNSASYNFRRYCLSSIL---KMKIGTHDGVFHCDEVLACF 348
           +T+V L  +   +   +   + N R+ CL  I    ++  G   G F  D  L C+
Sbjct: 13  VTFVALKPVKSMSADQVEKLAKNMRKSCLQKIAITEELVDGMRRGEFPDDHDLQCY 68


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 316 LRREFQSSSLKYLTNSNDENYMMQN 242
           L R    SSL   TN+ND++Y  QN
Sbjct: 356 LERSRSWSSLDN-TNTNDQDYSSQN 379


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 370  YKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTL 516
            Y+DA  +   +L   N     V  GS  DH +   +H  +  +   STL
Sbjct: 1300 YRDAVTVPGNNLIATNT---TVSSGSSEDHRRPLSEHIYSSIDSDYSTL 1345


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 469  ASFHGQKHCLHQQLYHSHS 413
            A  H     LH  +YH H+
Sbjct: 1728 AGLHPNNTLLHSFMYHEHA 1746


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 469  ASFHGQKHCLHQQLYHSHS 413
            A  H     LH  +YH H+
Sbjct: 1724 AGLHPNNTLLHSFMYHEHA 1742


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,896
Number of Sequences: 438
Number of extensions: 3184
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)