Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12n03
(593 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 1.7
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 2.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.9
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 5.2
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 5.2
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 5.2
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 21 6.9
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 21 9.1
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 21 9.1
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 47 APPKPEYGPPASAPSSEYGAP 109
+PP P GPP P GAP
Sbjct: 38 SPPNPSQGPPPGGPP---GAP 55
Score = 22.2 bits (45), Expect = 3.9
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +2
Query: 14 LLKKQEGYPAAAPPKPEYGPPASAPSSEYGAP 109
++ +Q P++ P P+ P S + + G+P
Sbjct: 8 IITQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/46 (21%), Positives = 24/46 (52%)
Frame = -3
Query: 276 FVNLKNYEVA*AFNRNQLTSIIGNYFTTKIVLVGKIDQLWH*ATVY 139
FV +K ++ + TSI+ +++T+ +++ K +W + Y
Sbjct: 280 FVVVKVLDLRSQLEYDLQTSIMSRHYSTRAIVIEKGQSIWDYDSTY 325
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 491 PDPYLYPSTLSAFLS*YRTCLLLMS 417
PD Y+ PS + + CLL MS
Sbjct: 286 PDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 491 PDPYLYPSTLSAFLS*YRTCLLLMS 417
PD Y+ PS + + CLL MS
Sbjct: 286 PDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 491 PDPYLYPSTLSAFLS*YRTCLLLMS 417
PD Y+ PS + + CLL MS
Sbjct: 286 PDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 491 PDPYLYPSTLSAFLS*YRTCLLLMS 417
PD Y+ PS + + CLL MS
Sbjct: 286 PDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 491 PDPYLYPSTLSAFLS*YRTCLLLMS 417
PD Y+ PS + + CLL MS
Sbjct: 286 PDRYVMPSWIKMLFLQWLPCLLRMS 310
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 491 PDPYLYPSTLSAFLS*YRTCLLLMS 417
PD Y+ PS + + CLL MS
Sbjct: 286 PDRYVMPSWIKMLFLQWLPCLLRMS 310
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 491 PDPYLYPSTLSAFLS*YRTCLLLMS 417
PD Y+ PS + + CLL MS
Sbjct: 354 PDRYVMPSWIKMLFLQWLPCLLRMS 378
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 491 PDPYLYPSTLSAFLS*YRTCLLLMS 417
PD Y+ PS + + CLL MS
Sbjct: 354 PDRYVMPSWIKMLFLQWLPCLLRMS 378
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 5.2
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -3
Query: 579 NHIKK*HIYKNRHQFDAILTRKCNTLWHFARPLPVSVY 466
N+I Y N + ++ L N + P+PV +Y
Sbjct: 88 NYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPVPIY 125
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.8 bits (44), Expect = 5.2
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -3
Query: 579 NHIKK*HIYKNRHQFDAILTRKCNTLWHFARPLPVSVY 466
N+I Y N + ++ L N + P+PV +Y
Sbjct: 326 NYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPVPIY 363
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 5.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 480 PVSVYFICFFKLIQNLSSADELF 412
P Y FF+L+QN ++E F
Sbjct: 541 PTDSYIRSFFELLQNPKVSNEQF 563
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 503 YGILPDPYLYPSTLS 459
Y + DP+ YPS +S
Sbjct: 145 YWAITDPFTYPSKMS 159
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.0 bits (42), Expect = 9.1
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -3
Query: 579 NHIKK*HIYKNRHQFDAILTRKCNTLWHFARPLPVSVY 466
N+I Y N + ++ L N + P+PV +Y
Sbjct: 88 NYISNISNYNNDNNYNKKLYYNINYIEQIPVPVPVPIY 125
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 21.0 bits (42), Expect = 9.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 39 RRQHPRNLSMDPLLRPPRQN 98
+R++ + DP+L PP N
Sbjct: 422 QREYGIRVERDPILTPPSSN 441
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,448
Number of Sequences: 438
Number of extensions: 3272
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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