Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12m24
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0415 - 21080600-21080941,21081119-21081217,21085363-210854... 32 0.39
03_05_0653 + 26451795-26451972,26452724-26452800,26452898-264529... 31 0.52
01_01_0905 + 7116121-7116236,7116285-7116339,7116948-7117005,711... 31 0.52
12_01_0825 - 7611594-7611728,7612061-7612276,7612505-7612589,761... 31 0.91
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 31 0.91
03_04_0206 - 18493178-18495310 30 1.2
07_03_0538 + 19231318-19231382,19231652-19232390,19232468-192325... 29 2.8
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340... 28 4.8
05_05_0288 - 23870228-23870965,23871515-23871584,23871662-238717... 27 8.5
02_04_0639 + 24662786-24663451 27 8.5
>05_04_0415 -
21080600-21080941,21081119-21081217,21085363-21085455,
21085802-21085855,21085943-21086044,21086449-21086523,
21086662-21086784
Length = 295
Score = 31.9 bits (69), Expect = 0.39
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +1
Query: 292 YPTDMSDSSRPFYFNEGSILSPFPNDVKASFQNIMSQSK--PKNNAQYLSTGILNVAEIL 465
+P ++++ ++ YF + F M +++ PK+ G ++
Sbjct: 199 FPRELTEEAQSIYFTKNDYFPTFSAQTSGEIMTFMEEAQKIPKS----FGDGYIDYRS-- 252
Query: 466 KSNKQMEKHDEKDVHLEEEHECDKITR-VEKKDEFN 570
+ E+ + + + EEE ECDKI R V++K+ N
Sbjct: 253 DEEEMQEEEEGPEENEEEEDECDKILREVQEKETPN 288
>03_05_0653 +
26451795-26451972,26452724-26452800,26452898-26452981,
26453068-26453181,26453323-26453409,26454156-26454295,
26454388-26454475,26455330-26455403,26455936-26456069,
26456127-26456425,26456721-26456765
Length = 439
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 391 IMSQSKPKNNAQYLSTGILNVAEILKSNKQMEKHDEKDVHLEEE 522
I + P N + GI+ + ++++ Q E +DE DVH+EE+
Sbjct: 396 IHEEPLPTLNEDEEAVGIITMEDVIEELLQEEIYDETDVHVEEQ 439
>01_01_0905 +
7116121-7116236,7116285-7116339,7116948-7117005,
7117637-7117731,7117823-7117926,7118310-7118438,
7118845-7120633,7120849-7121054,7121865-7121949,
7122183-7122422
Length = 958
Score = 31.5 bits (68), Expect = 0.52
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = +1
Query: 190 IATVTPARYKKSCKRRHGSHSTFANNMPDFPEVEYPTDMSDSSRPFYFNEGSILSPF-PN 366
IA P R K C+ R +H N + + E T + + Y N+ + L+ F P
Sbjct: 128 IAQALPGRIGKQCRERWYNHLNPGINKEAWTQEEEITLIH--AHRMYGNKWAELTKFLPG 185
Query: 367 DVKASFQNIMSQSKPKNNAQYLSTGILNVAEILKSNK 477
S +N + S K Y+S+G+L L N+
Sbjct: 186 RTDNSIKNHWNSSVKKKVNSYMSSGLLTQVSCLPLNE 222
>12_01_0825 -
7611594-7611728,7612061-7612276,7612505-7612589,
7613170-7613372,7613935-7615723,7616322-7616450,
7616825-7616928,7618725-7618779,7618860-7618975
Length = 943
Score = 30.7 bits (66), Expect = 0.91
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = +1
Query: 190 IATVTPARYKKSCKRRHGSHSTFANNMPDFPEVEYPTDMSDSSRPFYFNEGSILSPF-PN 366
IA P R K C+ R +H N + + E T + + Y N+ + L+ F P
Sbjct: 77 IAQALPGRIGKQCRERWHNHLNPGINKEAWTQEEEITLI--HAHRMYGNKWAELTKFLPG 134
Query: 367 DVKASFQNIMSQSKPKNNAQYLSTGILNVAEILKSNK 477
+ +N + S K Y+S+G+L L N+
Sbjct: 135 RTDNAIKNHWNSSVKKKVDSYMSSGLLTQVSCLPLNE 171
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 30.7 bits (66), Expect = 0.91
Identities = 24/113 (21%), Positives = 45/113 (39%)
Frame = +1
Query: 235 RHGSHSTFANNMPDFPEVEYPTDMSDSSRPFYFNEGSILSPFPNDVKASFQNIMSQSKPK 414
R + S F + + P + +S SS + S D + NI S S P
Sbjct: 336 RMSTGSRFLHGVEKAPGYTFHGQISGSSHLSLHGRPPVFSSGSTDYEMDPSNINSSSVP- 394
Query: 415 NNAQYLSTGILNVAEILKSNKQMEKHDEKDVHLEEEHECDKITRVEKKDEFNE 573
N +QY + + + +M HD+ +E + + + ++ K+ E +E
Sbjct: 395 NESQYGIPQVAGFENSVAPSDRMVYHDDDAFRMERKRKHSEEVKIAKEVEAHE 447
>03_04_0206 - 18493178-18495310
Length = 710
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/73 (20%), Positives = 30/73 (41%)
Frame = +1
Query: 139 QKQSLSSQTGKNSASKNIATVTPARYKKSCKRRHGSHSTFANNMPDFPEVEYPTDMSDSS 318
++ + +TG +A + ++ K + G AN+ D + P D
Sbjct: 408 KQMKAAKKTGSKAAQDKVKGQALSKANKEAAKSKGKGKNVANDDDDMKPADLPQKWLDYK 467
Query: 319 RPFYFNEGSILSP 357
F+F E ++L+P
Sbjct: 468 VEFHFPEPTLLTP 480
>07_03_0538 +
19231318-19231382,19231652-19232390,19232468-19232516,
19232600-19232664,19232774-19232828,19234107-19234225,
19234346-19234412,19235316-19235437,19235521-19235790
Length = 516
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +1
Query: 268 MPD-FPEVEYPTDMSDSSRPFYFNEGSILSPFPNDVKASFQNIMSQSKPKNNAQYLSTGI 444
+PD F + P D+ R + S F DV+ +F N M + P N+ ++
Sbjct: 144 IPDYFDVIRNPMDLGTVKRKLTSKQYSNPYEFAADVRLTFSNAMKYNPPGNDVHGIAD-- 201
Query: 445 LNVAEILKSNKQMEKHDEKDVHLEEEHECDKITRVE 552
+ +I S ++ + KD +L +E K+ + +
Sbjct: 202 -QLNKIFDSEWKLLERKWKDRNLVQEQPSLKVLKAQ 236
>09_02_0042 -
3402424-3402534,3403242-3403345,3403448-3403562,
3404344-3404391,3404519-3404608,3404819-3404893,
3405001-3405153,3405695-3405779,3408051-3408121,
3408243-3408293,3409037-3409453,3409529-3409660,
3409779-3409892,3411113-3411179,3411264-3411397,
3411486-3411701,3412627-3413418
Length = 924
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 466 KSNKQMEKHDE---KDVHLEEEHECDKITRVEKKDEFNEFPDLLK 591
KSNK+M+ +E D+ E+E K+T + KK + + +++K
Sbjct: 277 KSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVK 321
>05_05_0288 -
23870228-23870965,23871515-23871584,23871662-23871749,
23871825-23871882,23871963-23872039,23872111-23872258
Length = 392
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 112 TEVVYTY-KPQKQSLSSQTGKNSASKNIATVTPARYKKSCKRR 237
TEV++ Y PQK S T S SK I + SCKR+
Sbjct: 303 TEVLHEYITPQKNGGGSTTSSTSGSKEINVEKLYLDEPSCKRQ 345
>02_04_0639 + 24662786-24663451
Length = 221
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Frame = +1
Query: 142 KQSLSSQTGKNSASKNIATVTPARYKKS-------CKRRHGSH--------STFANNMPD 276
++ L+ + + A+ ++ TPARY +S CK R GS +T PD
Sbjct: 141 RERLAEELRRGDAAVDVTLTTPARYCRSCMQTVIECKHRVGSGEFSPRCGVTTDFPTFPD 200
Query: 277 FPEVEYP 297
P+V YP
Sbjct: 201 SPDVPYP 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,158,982
Number of Sequences: 37544
Number of extensions: 280962
Number of successful extensions: 752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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