Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12m20
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   1.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 346 THKSAGNGYRINHSFLD*DLNQTVGYNRNDLRNLPLSYNR*SYNN 212
           T +      +I  S  +  ++    YN N+  N   +YN  +YNN
Sbjct: 304 TERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNN 348


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 128 LLKSYINNYVVSCIIDLNYKKMF*KYNFI 214
           ++ S  NNY  S   + NYK++    N+I
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 128 LLKSYINNYVVSCIIDLNYKKMF*KYNFI 214
           ++ S  NNY  S   + NYK++    N+I
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 128 LLKSYINNYVVSCIIDLNYKKMF*KYNFI 214
           ++ S  NNY  S   + NYK++    N+I
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 128 LLKSYINNYVVSCIIDLNYKKMF*KYNFI 214
           ++ S  NNY  S   + NYK++    N+I
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 128 LLKSYINNYVVSCIIDLNYKKMF*KYNFI 214
           ++ S  NNY  S   + NYK++    N+I
Sbjct: 81  IISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 343 GYHTPITEEFXGPPLVMD 396
           GY   +  +F GPP  ++
Sbjct: 16  GYDNSVRPDFGGPPATVE 33


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 122 KDLLKSYINNYVVSCIID 175
           KD++K ++   +V C+ID
Sbjct: 78  KDVVKIWVGPKLVICLID 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,710
Number of Sequences: 438
Number of extensions: 2920
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)