Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12m18
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    27   1.8  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   5.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   7.2  

>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 430 TVEFPVIMLNSILNSNCPRFSYKTRARRNCR 522
           T E P   LNS L S CP F  K   R N +
Sbjct: 212 TTENPSFRLNSALISRCPVFVLKKLTRDNVK 242


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 148  EFLSEQNEF*KFSENTGFFTKVCL 219
            EF  ++  + ++ EN GFF  +C+
Sbjct: 1268 EFTKQKKYYEQYKENLGFFDSLCI 1291


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 436  EFPVIMLNSILNS--NCPRFSYKTRARRNCRL 525
            E  + +L+  L S  N P  S KT A+RNC L
Sbjct: 988  EDSIYLLDMCLQSVVNIPLLSIKTTAQRNCTL 1019


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 255 MEFEEGLMSDTWTAPNELMEIFSMDQDYLDFLEESIPDFNICS 383
           +E +EG+  D+   P    E   +D D   F +E+    ++CS
Sbjct: 258 LEIQEGMQKDSSLVPVYKNEPLIVDADDYFFTDENKQTLSLCS 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,124
Number of Sequences: 5004
Number of extensions: 44702
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)