Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12m18
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625...    27   7.3  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    27   7.3  

>05_03_0212 +
           10260690-10261272,10261921-10262435,10262446-10262569,
           10262840-10263042,10263169-10263240,10264905-10265007,
           10265350-10265582
          Length = 610

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 298 QMNSWRSSPWTRTIW 342
           Q  +WR++P+TRT+W
Sbjct: 231 QSPNWRAAPFTRTVW 245


>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 261  FEEGLMSDTWTAPNELMEIFSMDQDYLDFLEESIPDFNIC-SENVSETSKA 410
            F+EG+  +    PN  +E+ SM   +   +E+ +   ++C S+ V+E  KA
Sbjct: 1012 FDEGVQVEI--PPNPEVELVSMKNTHSGVMEQQVGSSSVCPSDLVTEAEKA 1060


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,187
Number of Sequences: 37544
Number of extensions: 240092
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)