Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12m16
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    27   2.9  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   5.0  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.0  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   5.0  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   6.6  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   6.6  

>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 310 KESIQRVTSNTMLSCCIYKCSTLFTENL-NFENR 212
           KE  +  +    LS  +Y CS +FT    NFE R
Sbjct: 110 KEKFKPCSCQVSLSSVLYHCSVIFTTKAENFEKR 143


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 400 YGCQYIHIPNMPISKFDSPSGGSKRVTLL*KESI 299
           +G  + HIPN   S+FD P      +T   +ES+
Sbjct: 222 HGKFHFHIPNERRSRFDQPPSKRMALTSTARESV 255


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 510 TLAALIK-SIPSKVSLSLESGKIINGISITMCSNLTGNMVVNTSIFRTCPSASLTRLVEG 334
           +L+A++K S P   S SL SG + N    +    L G+ + N  +  +  +ASL     G
Sbjct: 485 SLSAMLKTSNPYMPSPSLLSGSLANSSEHSSSPRLRGSPIHNQPVSSSKSTASLNTNNNG 544

Query: 333 VR 328
           +R
Sbjct: 545 LR 546


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 515 IDFHRHEWYFSTDAKVHYKLLFXTYVSWCV 604
           +DF   +WY+  +AKV    L   Y + C+
Sbjct: 91  VDFDITQWYYPANAKVDVAQLVEPYRNDCI 120


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 131 FNYCTCEGSVVASVYDRESDDRYL---HLRPIF 220
           F+    +  +V SVYD+  DD++L    + PIF
Sbjct: 226 FDVTKMKSQMVVSVYDKYEDDKFLGSVKITPIF 258


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 282 IQCLAAVSISAVPCLPRT*ILKIG--RKCKYLSSLSR 178
           I C   + +S++PCLPR+ I ++    K ++  SL R
Sbjct: 89  IACFHHLLLSSLPCLPRSEIYRLANCNKLQFQISLLR 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,486
Number of Sequences: 5004
Number of extensions: 51737
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)