Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12m16
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 30 1.3
12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621 29 2.2
06_03_0034 - 15727569-15727826,15728483-15728713,15728789-157291... 29 2.2
05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718 29 2.2
12_01_0803 + 7371349-7372146,7372301-7372675 29 3.0
08_01_0145 + 1142675-1144042 29 3.0
05_03_0209 + 10139857-10140041,10140223-10140294,10140374-101404... 29 3.0
09_02_0015 - 2980811-2980924,2981231-2981266,2981447-2981519,298... 29 3.9
04_03_0083 + 10878487-10878714,10878781-10879223,10879267-108794... 29 3.9
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 29 3.9
10_04_0007 + 7439378-7439677,7439873-7440308,7440483-7440593,744... 28 5.2
08_01_0167 + 1370733-1371316,1371590-1371765,1371865-1372101,137... 28 5.2
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 28 5.2
06_03_0237 + 18576317-18576412,18577273-18577778,18577906-185780... 28 6.8
07_03_0059 + 12901191-12901316,12901333-12901452,12901891-129021... 27 9.0
05_03_0132 - 8786518-8786827,8786897-8787164,8787296-8788005,878... 27 9.0
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 95 INECVEIDNCLNFNYCTCEGSVVASVYDRESDDRYL 202
I+ +E DN + + CTC + +SV ++ S DR+L
Sbjct: 779 ISVLMENDNSITLDICTCVLPLASSVLEKSSYDRHL 814
>12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621
Length = 230
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 329 LTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINA 502
LTP+ R++LAD VR + +PV++ + + ET +LG F++
Sbjct: 121 LTPTPMRLQLADSSVRYPARIAEDVPVKIWDFFIPVDFVVLDMNTEKETPLILGRPFLST 180
Query: 503 AKVIID 520
A+ ID
Sbjct: 181 AEANID 186
>06_03_0034 -
15727569-15727826,15728483-15728713,15728789-15729151,
15729260-15729413,15729997-15730275,15730328-15730770
Length = 575
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 329 LTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINA 502
L P+ R++LAD VRN + +PV++ + ET +LG F++
Sbjct: 320 LAPTPMRLQLADSSVRNPTGIVENVPVKIRDFSISVDFVVLDMNTGKETPLILGRPFLST 379
Query: 503 AKVIID 520
A ID
Sbjct: 380 AGANID 385
>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
Length = 756
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 329 LTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINA 502
L+P+ R++LAD VR + +PV++ ET +LG F++
Sbjct: 567 LSPTPMRLQLADSSVRYPAGIAEDVPVKIRDFFISFDFVVLDMDTGKETPLILGRPFLST 626
Query: 503 AKVIID 520
A+V ID
Sbjct: 627 ARVNID 632
>12_01_0803 + 7371349-7372146,7372301-7372675
Length = 390
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 329 LTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINA 502
L P+ R++LAD VR + +PV++ +D +T +LG F++
Sbjct: 111 LIPTPMRLQLADSSVRYPAGIAEDVPVKIRDFFVPVDFVVLEMDSDKKTPLILGRPFLST 170
Query: 503 AKVIIDFHRHEWYFSTDAK 559
A+ ID F + K
Sbjct: 171 AEASIDVGARNIRFHINGK 189
>08_01_0145 + 1142675-1144042
Length = 455
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Frame = +2
Query: 155 SVVASVYDRESDDRYLHLRPIFKIQVLGKQGTALIDTAAKHCIAGHTLYALLLQ-----K 319
SVVA + DRE D L + + + Q ++H GH + +L Q +
Sbjct: 357 SVVAMLMDREEDVHQLRAKQVLYSTLSNAQTLDFFKRISQHLGFGHRYFYILQQINKFKQ 416
Query: 320 GHPLTPSTRRVKLADGHVRNMDVLTTILPV 409
G P+ + K H+R + ++ +I V
Sbjct: 417 GRPVRSAVH--KFLYKHIRAISIILSIASV 444
>05_03_0209 +
10139857-10140041,10140223-10140294,10140374-10140445,
10141095-10141166,10141427-10141498,10141628-10141663,
10141958-10142029,10142107-10142181,10142449-10142514,
10142610-10142675,10142748-10142792,10142882-10142946,
10143066-10143445,10143530-10143728,10143801-10143959,
10144042-10144160,10144294-10144504,10145336-10145567,
10145650-10145800,10145899-10146162
Length = 870
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 519 SIITLAALIKSIPSKVSLSLESGKIINGIS-ITMCSNLTGNMVVNTSIFRTCPSAS 355
+I L + SI ++ S G I+NGIS + SN+T ++T I R C +S
Sbjct: 151 TITNLVEIPHSIEMRIYASQRIGDIVNGISPLAFISNMTS---LSTIILRNCKISS 203
>09_02_0015 -
2980811-2980924,2981231-2981266,2981447-2981519,
2981608-2981882,2982286-2982504,2983537-2983828,
2983863-2984221,2984634-2984714,2984746-2984889,
2985235-2985538,2985617-2985849
Length = 709
Score = 28.7 bits (61), Expect = 3.9
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Frame = +2
Query: 212 PIFKIQVLGKQGTALIDTAAKHCIAGHTLYALLLQKGHPLTPSTRRVKLADGHVRNMDVL 391
P K+ +QG AL D A + ++ L L P+ R++LAD VR +
Sbjct: 242 PPLKMSRRSRQGEALCDLGANVSVMPKDVFDKL--NFTVLAPTPMRLQLADSSVRYPVGI 299
Query: 392 TTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINAAKVIIDFHRHEWYFSTDAK 559
+PV++ ET +LG F++ ID F + K
Sbjct: 300 AEDVPVKIRDFFIPVDFVVLNMDTGKETPLILGRPFLSTTGANIDVGTESIRFHINGK 357
>04_03_0083 +
10878487-10878714,10878781-10879223,10879267-10879423,
10879573-10880433
Length = 562
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 329 LTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINA 502
L P+ R++LAD V + +PV++ +D ET +LG F++
Sbjct: 494 LIPTPMRLQLADSSVYYPAGIAEDVPVKVRDFFFPVDFVVLEMKSDKETPLILGHPFLST 553
Query: 503 AKVIID 520
AK ID
Sbjct: 554 AKASID 559
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 329 LTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINA 502
L P+ R++LAD VR + +PV++ ET +LG F++
Sbjct: 280 LAPTPMRLQLADSLVRYPAGIAEDVPVKIRDFFIPIDFVVLDMDTGKETPLILGRPFLST 339
Query: 503 AKVIIDFHRHEWYFSTDAK 559
A+ ID +F + K
Sbjct: 340 ARANIDVGTRSIHFHINGK 358
>10_04_0007 +
7439378-7439677,7439873-7440308,7440483-7440593,
7440633-7440762,7440798-7441512
Length = 563
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 347 RVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINAAKVIID 520
R++LAD VR + + LPV+++ + ET +LG F++ A+ ID
Sbjct: 432 RLQLADSSVRYLAGIAEDLPVKIQDFFILVDFVVLDMDTEKETPLILGHPFLSTARANID 491
>08_01_0167 +
1370733-1371316,1371590-1371765,1371865-1372101,
1372377-1372495,1372530-1372906,1373012-1373117,
1373520-1373606,1375367-1375421,1375775-1376311,
1377669-1377739,1377899-1377938,1379560-1379852
Length = 893
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 329 LTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINA 502
LTP+ R++LAD V + + +PV++ ET +LG F++
Sbjct: 401 LTPTPMRLQLADSSVHYLAGIAEDVPVKIRDCFIPVDFVVLDIDTGKETPLILGRPFLST 460
Query: 503 AKVIID 520
A+ ID
Sbjct: 461 AEANID 466
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2
Query: 192 SSLSRSYTDATTLPSHVQ*LKFKQLSISTH 103
+SL RS+ +++LPS +Q + +QL STH
Sbjct: 482 ASLPRSFVSSSSLPSWLQHCRDQQLQESTH 511
>06_03_0237 +
18576317-18576412,18577273-18577778,18577906-18578024,
18578409-18578763,18578803-18578866,18578967-18579231,
18579354-18579529
Length = 526
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 311 LQKGHPLTPSTRRVKLADGHVRNMDVLTTILPVRLE 418
LQ HPLTPS VK H + D I+ + E
Sbjct: 134 LQHNHPLTPSPSAVKPMRAHKNHDDTAMKIVDIMQE 169
>07_03_0059 +
12901191-12901316,12901333-12901452,12901891-12902170,
12902348-12902895,12902943-12903122,12904331-12904846
Length = 589
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 329 LTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINA 502
L P+ R++LAD VR + I+PV++ ET +LG F++
Sbjct: 286 LAPTPMRLQLADSLVRYPAGVAEIVPVKIRDFFIPVDFVVLDMDTGKETPLILGRPFLST 345
Query: 503 AKVIID 520
A ID
Sbjct: 346 AGANID 351
>05_03_0132 -
8786518-8786827,8786897-8787164,8787296-8788005,
8788060-8788346,8788761-8789033
Length = 615
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +2
Query: 329 LTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVXXXXXXXXXXSNDNET--LLGIDFINA 502
L P R+ LAD VR + +PV++ +D ET +LG F +
Sbjct: 530 LAPKQMRLLLADSSVRYPAGIAEDVPVKIRDFFIPVDFVILDMESDKETPVILGCPFPST 589
Query: 503 AKVIIDFHRHEWYFSTDAK 559
++ ID +F + K
Sbjct: 590 SEANIDVGAGSIHFHINGK 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,419
Number of Sequences: 37544
Number of extensions: 296057
Number of successful extensions: 712
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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