Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12m16
         (619 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075425-1|AAL68241.1| 1234|Drosophila melanogaster LD46584p pro...    30   2.2  
AJ011114-1|CAA09492.1| 1234|Drosophila melanogaster coatomer alp...    30   2.2  
AE014296-317|AAF47535.1| 1234|Drosophila melanogaster CG7961-PB,...    30   2.2  
AE014296-316|AAF47534.1| 1234|Drosophila melanogaster CG7961-PA,...    30   2.2  
AE014298-2945|AAF49028.2| 2067|Drosophila melanogaster CG11943-P...    28   8.8  
AE014298-2944|AAN09521.1| 2090|Drosophila melanogaster CG11943-P...    28   8.8  

>AY075425-1|AAL68241.1| 1234|Drosophila melanogaster LD46584p
           protein.
          Length = 1234

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 176 DRESDDRYLHLRPI---FKIQVLGKQGTALIDTAAKHCIAGHTLYALLLQKGHP 328
           DRE   R LH+ P    FK+ ++ ++   ++       + G ++ A L QKG+P
Sbjct: 581 DRECRTRVLHIDPTEYKFKLALIQRKYDEVLHMVRNARLVGQSIIAYLQQKGYP 634


>AJ011114-1|CAA09492.1| 1234|Drosophila melanogaster coatomer alpha
           subunit protein.
          Length = 1234

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 176 DRESDDRYLHLRPI---FKIQVLGKQGTALIDTAAKHCIAGHTLYALLLQKGHP 328
           DRE   R LH+ P    FK+ ++ ++   ++       + G ++ A L QKG+P
Sbjct: 581 DRECRTRVLHIDPTEYKFKLALIQRKYDEVLHMVRNARLVGQSIIAYLQQKGYP 634


>AE014296-317|AAF47535.1| 1234|Drosophila melanogaster CG7961-PB,
           isoform B protein.
          Length = 1234

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 176 DRESDDRYLHLRPI---FKIQVLGKQGTALIDTAAKHCIAGHTLYALLLQKGHP 328
           DRE   R LH+ P    FK+ ++ ++   ++       + G ++ A L QKG+P
Sbjct: 581 DRECRTRVLHIDPTEYKFKLALIQRKYDEVLHMVRNARLVGQSIIAYLQQKGYP 634


>AE014296-316|AAF47534.1| 1234|Drosophila melanogaster CG7961-PA,
           isoform A protein.
          Length = 1234

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 176 DRESDDRYLHLRPI---FKIQVLGKQGTALIDTAAKHCIAGHTLYALLLQKGHP 328
           DRE   R LH+ P    FK+ ++ ++   ++       + G ++ A L QKG+P
Sbjct: 581 DRECRTRVLHIDPTEYKFKLALIQRKYDEVLHMVRNARLVGQSIIAYLQQKGYP 634


>AE014298-2945|AAF49028.2| 2067|Drosophila melanogaster CG11943-PA,
            isoform A protein.
          Length = 2067

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 74   SKCNFGKINECVEIDNCLNFNYCTCEGSVVASVYDRES--DDRYLHLRPIFKIQVLGKQG 247
            S  N  +I + +  D  L +          A  Y++E   DDR L L+ +   +V+G  G
Sbjct: 1505 SLLNCLRIAKRLRTDEHLEYQETLISRQESARTYNKEQRRDDR-LRLKAM-AAEVIGTFG 1562

Query: 248  TALIDTAAKHCIAGHTLYALL 310
              LIDT     + GH +  +L
Sbjct: 1563 EKLIDTICHDAVTGHDVCRML 1583


>AE014298-2944|AAN09521.1| 2090|Drosophila melanogaster CG11943-PB,
            isoform B protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 74   SKCNFGKINECVEIDNCLNFNYCTCEGSVVASVYDRES--DDRYLHLRPIFKIQVLGKQG 247
            S  N  +I + +  D  L +          A  Y++E   DDR L L+ +   +V+G  G
Sbjct: 1528 SLLNCLRIAKRLRTDEHLEYQETLISRQESARTYNKEQRRDDR-LRLKAM-AAEVIGTFG 1585

Query: 248  TALIDTAAKHCIAGHTLYALL 310
              LIDT     + GH +  +L
Sbjct: 1586 EKLIDTICHDAVTGHDVCRML 1606


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,209,676
Number of Sequences: 53049
Number of extensions: 551563
Number of successful extensions: 1341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)