Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12m16
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    30   1.5  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U58727-6|AAB00586.1|  112|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    28   6.1  
AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 29  NNLKFSTNHDCDTKGSKCNFGKINECVEIDNCLNFNYCTCEGS-VVASVYDR 181
           NN  ++T + CD   +    G  N C  IDN L    C C+ +  +   Y+R
Sbjct: 656 NNSHYATLYTCDPSSACAAMGLRNNCSTIDNSL--TACCCDSNECIDPTYNR 705


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 29  NNLKFSTNHDCDTKGSKCNFGKINECVEIDNCLNFNYCTCEGS-VVASVYDR 181
           NN  ++T + CD   +    G  N C  IDN L    C C+ +  +   Y+R
Sbjct: 656 NNSHYATLYTCDPSSACAAMGLRNNCSTIDNSL--TACCCDSNECIDPTYNR 705


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
            W05B2.2 protein.
          Length = 1278

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 89   GKINECVEIDNCLNFNYCTCEGSV 160
            G + +C   D+C  F+ CT +GSV
Sbjct: 956  GDVFQCTTTDDCPEFHKCTAQGSV 979


>U58727-6|AAB00586.1|  112|Caenorhabditis elegans Hypothetical
           protein D1005.4 protein.
          Length = 112

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 56  DCDTKGSKCNFGKINECVEIDNCLNFNYCTCEG 154
           +CDT G  C   K+ +      C N+++C   G
Sbjct: 48  NCDTNGVSCQKEKLGDVDVKACCCNYDFCNLSG 80


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -1

Query: 526  MKINNNFGSINKINTQ*SFIIIRIREDYKWNI 431
            M++  N+  + +++ + +  I++IR DYKWN+
Sbjct: 1782 MRLLQNYFPLVELSRRITTAIMQIRSDYKWNM 1813


>AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical
           protein M03F8.5 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 152 GSVVASVYDRESDDRYLHLRPIFKIQVLGKQGTALID 262
           GSVV + Y++  D+  +++ PIF  ++   +  +LID
Sbjct: 231 GSVVFNAYNKVGDNSAVNMLPIFANELQETESMSLID 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,010
Number of Sequences: 27780
Number of extensions: 291860
Number of successful extensions: 755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)