Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12m16
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.78 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   9.6  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 143 YNN*NSNNYQFPHIR*FFQNY 81
           YNN N+NNY   + + +++NY
Sbjct: 330 YNNYNNNNYNNYNKKLYYKNY 350


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 194 YHHSHGRTRTLQH 156
           +HH H +T++LQH
Sbjct: 351 HHHHHHQTQSLQH 363


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 158 HFPHMYNN*NSNNYQF 111
           H  + YNN N NNY +
Sbjct: 91  HNNNNYNNNNYNNYNY 106



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 203 ANTYHHSHGRTRTLQHFPHMYNN*NSNNYQ 114
           +N   H++       +  + YNN N NNY+
Sbjct: 86  SNKTIHNNNNYNNNNYNNYNYNNNNYNNYK 115


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 212 AVNANTYHHSHGRTRTLQHFPHMYNN*NSNNY 117
           +++  T H+++       ++ + YNN N+NNY
Sbjct: 317 SLSNKTIHNNNNYNNN--NYNNNYNNYNNNNY 346


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 11  IIEPNCNNLKFSTN 52
           + E  CN++K+STN
Sbjct: 149 MFEALCNHIKYSTN 162


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 479 VKFHYH*NQGRL*MEYQSLCVLTSLVIWLS 390
           V FH   + G   ++    CVL  ++ W+S
Sbjct: 205 VYFHLQRHMGNFLIQVYGPCVLLVVLSWVS 234


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 364 WACSEYGCIDNHITSEVRTHSD 429
           WA ++ G   + IT+  R H+D
Sbjct: 115 WAQNKAGACGSAITTAYRIHAD 136


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 154 SLTCTIIKIQTIINFHTFVNFSKIT 80
           SLT TI+  QT    H + N  + T
Sbjct: 13  SLTITIVMCQTFTYSHGWTNGKRST 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,616
Number of Sequences: 438
Number of extensions: 3941
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)