Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12m15
(656 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015504-1|AAH15504.1| 301|Homo sapiens SCO cytochrome oxidase ... 157 2e-38
AF295386-1|AAG23836.1| 301|Homo sapiens cytochrome oxidase defi... 157 2e-38
AF183424-1|AAG09693.1| 301|Homo sapiens SCO1/2 protein protein. 157 2e-38
AF026852-1|AAD08641.1| 301|Homo sapiens h-sco1 protein. 157 2e-38
AF131816-1|AAD20051.1| 190|Homo sapiens h-sco1 protein. 134 3e-31
CR456569-1|CAG30455.1| 266|Homo sapiens SCO2 protein. 120 3e-27
BC102025-1|AAI02026.1| 266|Homo sapiens SCO cytochrome oxidase ... 120 3e-27
BC102024-1|AAI02025.1| 266|Homo sapiens cytochrome oxidase defi... 120 3e-27
AL021683-1|CAA16671.1| 266|Homo sapiens protein ( Homo sapiens ... 120 3e-27
AF177385-1|AAF05313.1| 266|Homo sapiens cytochrome c oxidase as... 120 3e-27
AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain... 33 0.68
AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain... 33 0.68
AK002043-1|BAA92051.1| 122|Homo sapiens protein ( Homo sapiens ... 31 2.7
BC021101-1|AAH21101.1| 651|Homo sapiens cofactor required for S... 31 4.8
AK001674-1|BAA91827.1| 651|Homo sapiens protein ( Homo sapiens ... 31 4.8
AF117657-1|AAD22031.2| 651|Homo sapiens thyroid hormone recepto... 31 4.8
AF105421-1|AAD30856.1| 652|Homo sapiens vitamin D3 receptor int... 31 4.8
AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3 pr... 30 8.3
AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine recepto... 30 8.3
>BC015504-1|AAH15504.1| 301|Homo sapiens SCO cytochrome oxidase
deficient homolog 1 (yeast) protein.
Length = 301
Score = 157 bits (382), Expect = 2e-38
Identities = 66/127 (51%), Positives = 90/127 (70%)
Frame = +3
Query: 276 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 455
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 456 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPE 635
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 636 LVGKYCK 656
+ Y K
Sbjct: 212 AIANYVK 218
>AF295386-1|AAG23836.1| 301|Homo sapiens cytochrome oxidase
deficient in yeast homolog 1 protein.
Length = 301
Score = 157 bits (382), Expect = 2e-38
Identities = 66/127 (51%), Positives = 90/127 (70%)
Frame = +3
Query: 276 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 455
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 456 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPE 635
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 636 LVGKYCK 656
+ Y K
Sbjct: 212 AIANYVK 218
>AF183424-1|AAG09693.1| 301|Homo sapiens SCO1/2 protein protein.
Length = 301
Score = 157 bits (382), Expect = 2e-38
Identities = 66/127 (51%), Positives = 90/127 (70%)
Frame = +3
Query: 276 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 455
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 456 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPE 635
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 636 LVGKYCK 656
+ Y K
Sbjct: 212 AIANYVK 218
>AF026852-1|AAD08641.1| 301|Homo sapiens h-sco1 protein.
Length = 301
Score = 157 bits (382), Expect = 2e-38
Identities = 66/127 (51%), Positives = 90/127 (70%)
Frame = +3
Query: 276 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 455
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 456 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPE 635
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 636 LVGKYCK 656
+ Y K
Sbjct: 212 AIANYVK 218
>AF131816-1|AAD20051.1| 190|Homo sapiens h-sco1 protein.
Length = 190
Score = 134 bits (323), Expect = 3e-31
Identities = 56/107 (52%), Positives = 76/107 (71%)
Frame = +3
Query: 336 MMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPD 515
M +VKKEK E L++ER++ +GK +GG F L G+ D+LG+W+LIYFGFTHCPD
Sbjct: 1 MKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPD 60
Query: 516 ICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCK 656
+CP+ELEK+ +VVD D + P L P+FIS+DP+RDT E + Y K
Sbjct: 61 VCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK 107
>CR456569-1|CAG30455.1| 266|Homo sapiens SCO2 protein.
Length = 266
Score = 120 bits (290), Expect = 3e-27
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Frame = +3
Query: 303 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 479
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 480 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKY 650
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY 180
>BC102025-1|AAI02026.1| 266|Homo sapiens SCO cytochrome oxidase
deficient homolog 2 (yeast) protein.
Length = 266
Score = 120 bits (290), Expect = 3e-27
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Frame = +3
Query: 303 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 479
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 480 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKY 650
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY 180
>BC102024-1|AAI02025.1| 266|Homo sapiens cytochrome oxidase
deficient homolog 2 protein.
Length = 266
Score = 120 bits (290), Expect = 3e-27
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Frame = +3
Query: 303 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 479
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 480 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKY 650
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY 180
>AL021683-1|CAA16671.1| 266|Homo sapiens protein ( Homo sapiens
cDNA homologous to Yeast SCO1 & SCO2 genes and
C.elegans C01F1.2 gene. ).
Length = 266
Score = 120 bits (290), Expect = 3e-27
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Frame = +3
Query: 303 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 479
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 480 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKY 650
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY 180
>AF177385-1|AAF05313.1| 266|Homo sapiens cytochrome c oxidase
assembly protein isoform 2 protein.
Length = 266
Score = 120 bits (290), Expect = 3e-27
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Frame = +3
Query: 303 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 479
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 480 MLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKY 650
+L+YFGFTHCPDICPDELEKL +VV + P PP+QPVFI+VDP+RD E + +Y
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY 180
>AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain 4
protein protein.
Length = 3567
Score = 33.5 bits (73), Expect = 0.68
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +3
Query: 462 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELV 641
D L M + TH + PD +EKL V + D + L P S +RDTP V
Sbjct: 1208 DVLSNKMHLQLHLTHLHSVSPDCVEKLLMTVPVPDVMMPNSMLLPAAASEKSERDTPAAV 1267
>AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain
protein 4 protein.
Length = 3599
Score = 33.5 bits (73), Expect = 0.68
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +3
Query: 462 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELV 641
D L M + TH + PD +EKL V + D + L P S +RDTP V
Sbjct: 1253 DVLSNKMHLQLHLTHLHSVSPDCVEKLLMTVPVPDVMMPNSMLLPAAASEKSERDTPAAV 1312
>AK002043-1|BAA92051.1| 122|Homo sapiens protein ( Homo sapiens
cDNA FLJ11181 fis, clone PLACE1007460. ).
Length = 122
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 484 NIHFPKKSAL-LTNLPSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTT 308
++H+P AL +T+L S K P I +C F + C + + V PPP T
Sbjct: 14 DVHWPHGLALGITSLEVPVPSDKGPWIH-MTACLFFLETGPHCREVIVKVSNPVMPPPAT 72
Query: 307 TVAAIDFH 284
D H
Sbjct: 73 LTWERDTH 80
>BC021101-1|AAH21101.1| 651|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 6, 77kDa protein.
Length = 651
Score = 30.7 bits (66), Expect = 4.8
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 213 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 386
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 387 KQL 395
+L
Sbjct: 185 SEL 187
>AK001674-1|BAA91827.1| 651|Homo sapiens protein ( Homo sapiens
cDNA FLJ10812 fis, clone NT2RP4000975. ).
Length = 651
Score = 30.7 bits (66), Expect = 4.8
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 213 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 386
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 387 KQL 395
+L
Sbjct: 185 SEL 187
>AF117657-1|AAD22031.2| 651|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP80
protein.
Length = 651
Score = 30.7 bits (66), Expect = 4.8
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 213 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 386
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 387 KQL 395
+L
Sbjct: 185 SEL 187
>AF105421-1|AAD30856.1| 652|Homo sapiens vitamin D3 receptor
interacting protein protein.
Length = 652
Score = 30.7 bits (66), Expect = 4.8
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 213 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 386
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 387 KQL 395
+L
Sbjct: 185 SEL 187
>AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3
protein.
Length = 4870
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 201 VFRALSTTPVRQCAVPPKRTPKTLMPITWKSM 296
+FR+ PV QC PP+ +T+ P+ W M
Sbjct: 1474 IFRSEEKNPVPQC--PPRLDVQTIQPVLWSRM 1503
>AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine receptor
protein.
Length = 4866
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 201 VFRALSTTPVRQCAVPPKRTPKTLMPITWKSM 296
+FR+ PV QC PP+ +T+ P+ W M
Sbjct: 1475 IFRSEEENPVPQC--PPRLDVQTIQPVLWSRM 1504
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,305,671
Number of Sequences: 237096
Number of extensions: 1859871
Number of successful extensions: 4893
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4888
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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